NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE997 Query DataSets for GSE997
Status Public on Sep 17, 2004
Title Essential Thrombocythemia megakaryocytes versus normal megakaryocytes
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Normal donors BM CD34+ cells were differentiated in thrombopoietin-treated liquid suspension cultures. Briefly, CD34+ cells (80,000 /mL) were resuspended in a serum-free medium in the presence of 100 ng/mL of human recombinant thrombopoietin (TPO; Genzyme, Boston, MA). Every 3 days, viable cells were scored by Trypan blue dye exclusion and cultures were amplified with fresh serum-free medium. Each well was then supplemented with 100 ng/mL TPO. After 14 to 16 days of liquid culture, CD34-derived megakaryocytes (MKs) were purified by means of an anti-CD41a monoclonal antibody (MoAb) (Dako, Milan, Italy) directed against the glycoproteic *IIb-*3 complex and immunobeads (MPC 450 Dynabeads; Dynal, Oslo, Norway), as previously described (27). The purity of MKs was determined for each isolation by indirect immunofluorescence, using an anti-CD41b MoAb which reacts with a different epitope of *IIb-*3 subunit (Immunotech Inc., Westbrook, ME), followed by a goat anti-mouse IgG, covalently linked to fluorescein (Becton Dickinson, San Jose, CA).
Essential Throbocytemia BM CD34+ cells were differentiated in thrombopoietin-treated liquid suspension cultures. Briefly, CD34+ cells (80,000 /mL) were resuspended in a serum-free medium in the presence of 100 ng/mL of human recombinant thrombopoietin (TPO; Genzyme, Boston, MA). Every 3 days, viable cells were scored by Trypan blue dye exclusion and cultures were amplified with fresh serum-free medium. Each well was then supplemented with 100 ng/mL TPO. After 14 to 16 days of liquid culture, CD34-derived megakaryocytes (MKs) were purified by means of an anti-CD41a monoclonal antibody (MoAb) (Dako, Milan, Italy) directed against the glycoproteic *IIb-*3 complex and immunobeads (MPC 450 Dynabeads; Dynal, Oslo, Norway), as previously described (27). The purity of MKs was determined for each isolation by indirect immunofluorescence, using an anti-CD41b MoAb which reacts with a different epitope of *IIb-*3 subunit (Immunotech Inc., Westbrook, ME), followed by a goat anti-mouse IgG, covalently linked to fluorescein (Becton Dickinson, San Jose, CA).
Keywords: other
 
 
Contributor(s) Tenedini E, Fagioli ME, Vianelli N, Tagliafico E, Poli M, Gugliotta L, Martinelli G, Tura S, Baccarani M, Ferrari S, Catani L
Citation(s) 15271793
Submission date Jan 26, 2004
Last update date Aug 10, 2018
Contact name Elena Tenedini
E-mail(s) tenedini.elena@unimo.it
Phone 00390592055601
Fax 00390592055410
URL http://www.xlab.unimo.it
Organization name University of Modena and Reggio Emilia
Department department of biomedical sciences
Street address
City Modena
ZIP/Postal code 41100
Country Italy
 
Platforms (1)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
Samples (2)
GSM15648 Normal Megakaryocytes
GSM15650 Essential Thrombocythemia (ET) Megakaryocytes
Relations
BioProject PRJNA88051

Essential Thrombocythemia megakaryocytes (GSM15650) versus normal megakaryocytes (GSM15648) header descriptions
ID_REF
VALUE Affymetrix MAS 5.0 Signal Log Ratio
CHANGE Affymetrix MAS 5.0 Change

Data table
ID_REF VALUE CHANGE
AFFX-BioB-5_at 0.2 NC
AFFX-BioB-M_at 0.1 NC
AFFX-BioB-3_at 0.4 NC
AFFX-BioC-5_at 0.1 NC
AFFX-BioC-3_at 0.2 NC
AFFX-BioDn-5_at 0 NC
AFFX-BioDn-3_at 0.2 NC
AFFX-CreX-5_at 0 NC
AFFX-CreX-3_at 0.1 NC
AFFX-DapX-5_at 3 NC
AFFX-DapX-M_at 1 NC
AFFX-DapX-3_at -1.1 NC
AFFX-LysX-5_at 0.5 NC
AFFX-LysX-M_at 0 NC
AFFX-LysX-3_at 0.4 NC
AFFX-PheX-5_at 1.4 NC
AFFX-PheX-M_at -0.1 NC
AFFX-PheX-3_at -0.3 NC
AFFX-ThrX-5_at -0.2 NC
AFFX-ThrX-M_at 0.4 NC

Total number of rows: 22283

Table truncated, full table size 391 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap