|
| Status |
Public on Oct 31, 2019 |
| Title |
Cellular response to hepatitis E virus (HEV) infection |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
What happens in cells infected with HEV is largely unknown. We used a recently established genotype 3 HEV cell culture system and profiled the host responses by RNA-seq.
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| |
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| Overall design |
HepG2/C3A cells either inoculated with HEV (kernow C1 P6 strain) or not inoculated (mock) were cultured for 5 days. Total RNA were extracted and subjected RNA Seq. Differentially expressed genes between mock and infected groups were analyzed by DESeq2.
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| |
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| Contributor(s) |
Li X, Feng Z, Nadella V, Fitch J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Oct 14, 2016 |
| Last update date |
Oct 31, 2019 |
| Contact name |
Zongdi Feng |
| E-mail(s) |
zongdi.feng@nationwidechildrens.org
|
| Organization name |
Nationwide Children's Hospital
|
| Street address |
700 Children's Drive
|
| City |
Columbus |
| State/province |
Ohio |
| ZIP/Postal code |
43205 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
|
| Samples (8)
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| Relations |
| BioProject |
PRJNA348411 |
| SRA |
SRP091538 |
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