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Series GSE85100 Query DataSets for GSE85100
Status Public on Jan 23, 2017
Title PARP-1 Controls the Adipogenic Transcriptional Program by PARylating C/EBPβ and Modulating Its Transcriptional Activity
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Poly(ADP-ribosyl)ation (PARylation) is a regulatory post-translational modification of proteins mediated by PARP family members, such as PARP-1. Although PARP-1 and PARylation have been widely studied, very few examples of definitive biological roles for site-specific PARylation of proteins exist in the literature. Here we show that C/EBPβ, a key pro-adipogenic transcription factor, is PARylated by PARP-1 at Glu135, as well as two adjacent amino acids (K133 and E139). PARylation at these sites inhibits C/EBPβ’s DNA binding and transcriptional activities, and attenuates adipogenesis in various cell-based models of adipogenesis. Interestingly, PARP-1 catalytic activity drops precipitously during the first 48 hours of hormone-induced differentiation, corresponding to a release of C/EBPβ from PARylation-mediated inhibition. This allows the binding of C/EBPβ to the promoters of pro-adipogenic target genes (e.g., Cebpa, Pparg2), their subsequent expression, and continued differentiation. In this regard, depletion of PARP-1 or chemical inhibition of its catalytic activity enhances early adipogenic events. Collectively, our results provide a clear example of how site-specific PARylation of a key transcription factor can affect its molecular and biochemical functions, as well as the biological outcomes that it controls.
 
Overall design ChIP-seq (C/EBP beta) were perfomed in 3T3-L1 cells expressing doxycycline inducible HA tagged C/EBP beta LAP wildtype and PARylation site mutant, with or without doxycycline and PARP inhibitor treatment.
Web link http://www.cell.com/molecular-cell/fulltext/S1097-2765(16)30723-7
 
Contributor(s) Luo X, Ryu KW, Kim D, Nandu T, Kraus LW
Citation(s) 28107648
Submission date Aug 02, 2016
Last update date May 15, 2019
Contact name W. Lee Kraus
E-mail(s) lee.kraus@utsouthwestern.edu
Organization name UT Southwestern Medical Center
Street address 5323 Harry Hines Blvd.
City Dallas
State/province TX
ZIP/Postal code 75390-8511
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (20)
GSM2257695 WT_-Dox_rep_1_Input
GSM2257696 WT_-Dox_rep_2_Input
GSM2257697 Mut_-Dox_rep_1_Input
Relations
BioProject PRJNA336169
SRA SRP080809

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85100_Mut_+Dox_CEBPB_ChIP_peaks.bed.gz 258.3 Kb (ftp)(http) BED
GSE85100_Mut_-Dox_CEBPB_ChIP_peaks.bed.gz 101.6 Kb (ftp)(http) BED
GSE85100_WT_+Dox_+BYK_CEBPB_ChIP_peaks.bed.gz 265.5 Kb (ftp)(http) BED
GSE85100_WT_+Dox_CEBPB_ChIP_peaks.bed.gz 180.2 Kb (ftp)(http) BED
GSE85100_WT_-Dox_CEBPB_ChIP_peaks.bed.gz 159.3 Kb (ftp)(http) BED
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