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GEO accession:
Series GSE84360
Query DataSets for GSE84360
Status
Public on Jan 02, 2020
Title
Reprogramming Hutchinson-Gilford Progeria Syndrome fibroblasts resets epigenomic landscape in patient-derived induced pluripotent stem cells Jan 01, 2018 pending None
Organism
Homo sapiens
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Jul 13, 2016
Last update date
Jan 04, 2020
Organization
Ottawa Hospital Research Institute
Phone
(613) 737-8899 -73255
Department
Cellular and Molecular Medicine
Lab
Ottawa Bioinformatics Core Facility
Street address
501 Smyth Rd.
City
Ottawa
State/province
ON
ZIP/Postal code
K1H 8L6
Country
Canada
Platforms (2)
GPL10999
Illumina Genome Analyzer IIx (Homo sapiens)
GPL16686
[HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]
Samples (70)
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GSM2232606
HGADFN003 iPSC replicate 1
GSM2232607
HGADFN003 iPSC replicate 2
GSM2232608
HGADFN003 Vascular smooth muscle
GSM2232609
HGADFN003 iPSC replicate 3
GSM2232610
HGADFN003 iPSC replicate 4
GSM2232611
HGADFN003 Fibroblast early passage replicate 1
GSM2232612
HGADFN003 Fibroblast late passage replicate 1
GSM2232613
HGADFN003 Fibroblast late passage replicate 2
GSM2232614
HGADFN003 Fibroblast early passage replicate 2
GSM2232615
HGMDFN090 iPSC replicate 1
GSM2232616
HGMDFN090 iPSC replicate 2
GSM2232617
HGMDFN090 iPSC replicate 3
GSM2232618
HGMDFN090 iPSC replicate 4
GSM2232619
HGMDFN090 iPSC Vascular smooth muscle
GSM2232620
HGMDFN090 Fibroblast early passage replicate 1
GSM2232621
HGMDFN090 Fibroblast late passage replicate 1
GSM2232622
HGMDFN090 Fibroblast late passage replicate 2
GSM2232623
HGMDFN090 Fibroblast early passage replicate 2
GSM2232624
HGADFN167 iPSC replicate 1
GSM2232625
HGADFN167 iPSC replicate 2
GSM2232626
HGADFN167 Vascular smooth muscle
GSM2232627
HGADFN167 iPSC replicate 3
GSM2232628
HGADFN167 iPSC replicate 4
GSM2232629
HGADFN167 Fibroblast early passage replicate 1
GSM2232630
HGADFN167 Fibroblast late passage replicate 1
GSM2232631
HGADFN167 Fibroblast late passage replicate 2
GSM2232632
HGADFN167 Fibroblast early passage replicate 2
GSM2232633
HGFDFN168 iPSC replicate 1
GSM2232634
HGFDFN168 iPSC replicate 2
GSM2232635
HGFDFN168 iPSC replicate 3
GSM2232636
HGFDFN168 iPSC replicate 4
GSM2232637
HGFDFN168 Fibroblast early passage replicate 1
GSM2232638
HGFDFN168 Fibroblast late passage replicate 1
GSM2232639
HGFDFN168 Fibroblast late passage replicate 2
GSM2232640
HGFDFN168 Fibroblast early passage replicate 2
GSM2232641
AG01972 iPSC replicate 1
GSM2232642
AG01972 iPSC replicate 2
GSM2232643
AG01972 iPSC replicate 3
GSM2232644
AG01972 iPSC replicate 4
GSM2232645
AG01972 iPSC Fibroblast early passage replicate 1
GSM2232646
AG01972 iPSC Fibroblast late passage replicate 1
GSM2232647
AG01972 iPSC Fibroblast late passage replicate 2
GSM2232648
AG01972 iPSC Fibroblast early passage replicate 2
GSM2232649
BJ1 iPSC replicate 1
GSM2232650
BJ1 iPSC replicate 2
GSM2232651
BJ1 iPSC replicate 3
GSM2232652
BJ1 iPSC replicate 4
GSM2232653
BJ1 Vascular smooth muscle
GSM2232654
BJ1 Fibroblast late passage replicate 1
GSM2232655
BJ1 Fibroblast late passage replicate 2
GSM2232656
BJ1 Fibroblast early passage replicate 1
GSM2232657
BJ1 Fibroblast early passage replicate 2
GSM2232658
H9 ESC replicate 1
GSM2232659
H9 ESC replicate 2
GSM2232668
HGPS IgG replicate 1
GSM2232669
HGPS IgG replicate 2
GSM2232670
Normal IgG replicate 1
GSM2232671
Normal IgG replicate 2
GSM2232676
HGPS H3K4me3 replicate 1
GSM2232677
HGPS H3K4me3 replicate 2
GSM2232678
Normal H3K4me3 replicate 1
GSM2232679
Normal H3K4me3 replicate 2
GSM2232680
HGPS H3K27me3 replicate 1
GSM2232681
HGPS H3K27me3 replicate 2
GSM2232682
Normal H3K27me3 replicate 1
GSM2232683
Normal H3K27me3 replicate 2
GSM2232684
HGPS Input replicate 1
GSM2232685
HGPS Input replicate 2
GSM2232686
Normal Input replicate 1
GSM2232687
Normal Input replicate 2
This SuperSeries is composed of the following SubSeries:
GSE84351
Reprogramming Hutchinson-Gilford Progeria Syndrome fibroblasts resets epigenomic landscape in patient-derived induced pluripotent stem cells [Affymetrix]
GSE84356
Reprogramming Hutchinson-Gilford Progeria Syndrome fibroblasts resets epigenomic landscape in patient-derived induced pluripotent stem cells [ChIP-Seq]
Relations
BioProject
PRJNA335408
Download family
Format
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TXT
Supplementary file
Size
Download
File type/resource
GSE84360_RAW.tar
424.9 Mb
(http)
(custom)
TAR (of CEL)
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