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GEO accession:
Series GSE58408
Query DataSets for GSE58408
Status
Public on Dec 08, 2015
Title
Foxd3 binding at enhancers controls developmental timing of gene expression by regulation of histone acetylation
Organism
Mus musculus
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
26748757
Submission date
Jun 11, 2014
Last update date
May 15, 2019
Contact name
Raga Krishnakumar
E-mail(s)
raga.krishnakumar@gmail.com
Organization name
UCSF
Lab
Blelloch
Street address
912E RMB, 35 Medical Center Way
City
San Francisco
State/province
CA
ZIP/Postal code
94143
Country
USA
Platforms (2)
GPL6885
Illumina MouseRef-8 v2.0 expression beadchip
GPL13112
Illumina HiSeq 2000 (Mus musculus)
Samples (142)
Less...
More...
GSM1406400
dY EtOH rep2 hyb1
GSM1406401
dY Tam rep2 hyb1
GSM1406402
dY EtOH rep3 hyb1
GSM1406403
dY Tam rep3 hyb1
GSM1406404
R Tam rep1 hyb1
GSM1406405
R EtOH rep2 hyb1
GSM1406406
R Tam rep2 hyb1
GSM1406407
R EtOH rep3 hyb1
GSM1406408
R Tam rep3 hyb1
GSM1406409
dY EtOH rep1 hyb1
GSM1406410
dY Tam rep1 hyb1
GSM1406411
dY Tam rep2 hyb2
GSM1406412
dY Tam rep3 hyb2
GSM1406413
R EtOH rep1 hyb2
GSM1406414
R Tam rep1 hyb2
GSM1406415
R EtOH rep2 hyb2
GSM1406416
R Tam rep2 hyb2
GSM1406417
R EtOH rep3 hyb2
GSM1406418
R Tam rep3 hyb2
GSM1410329
R-IgG ChIP
GSM1410330
R-H3K4me1 ChIP
GSM1410331
R-H3K4me3 ChIP
GSM1410332
R-H3K27ac ChIP
GSM1410333
R-H3K27me3 ChIP
GSM1410334
R-p300 ChIP
GSM1410335
R-Oct4 ChIP
GSM1410336
R-RNA Pol2 ChIP
GSM1410337
dR-IgG ChIP
GSM1410338
dR-H3K4me1 ChIP
GSM1410339
dR-H3K4me3 ChIP
GSM1410340
dR-H3K27ac ChIP
GSM1410341
dR-H3K27me3 ChIP
GSM1410342
dR-p300 ChIP
GSM1410343
dR-Oct4 ChIP
GSM1410344
dR-RNA Pol2 ChIP
GSM1410345
dY-IgG ChIP
GSM1410346
dY-H3K4me1 ChIP
GSM1410347
dY-H3K4me3 ChIP
GSM1410348
dY-H3K27ac ChIP
GSM1410349
dY-H3K27me3 ChIP
GSM1410350
dY-p300 ChIP
GSM1410351
dY-Oct4 ChIP
GSM1410352
dY-RNA Pol2 ChIP
GSM1410353
G-IgG ChIP
GSM1410354
G-H3K4me1 ChIP
GSM1410355
G-H3K4me3 ChIP
GSM1410356
G-H3K27ac ChIP
GSM1410357
G-H3K27me3 ChIP
GSM1410358
G-p300 ChIP
GSM1410359
G-RNA Pol2 ChIP
GSM1410360
R-Ctrl-Flag ChIP-rep1
GSM1410361
R-Ctrl-Flag ChIP-rep2
GSM1410362
R-Targ-Flag ChIP-rep1
GSM1410363
R-Targ-Flag ChIP-rep2
GSM1410364
dY-Ctrl-Flag ChIP-rep1
GSM1410365
dY-Ctrl-Flag ChIP-rep2
GSM1410366
dY-Targ-Flag ChIP-rep1
GSM1410367
dY-Targ-Flag ChIP-rep2
GSM1410368
R-Foxd3CKO-EtOH-IgG ChIP-rep1
GSM1410369
R-Foxd3CKO-EtOH-H3K4me1 ChIP-rep1
GSM1410370
R-Foxd3CKO-EtOH-H3K4me3 ChIP-rep1
GSM1410371
R-Foxd3CKO-EtOH-H3K27ac ChIP-rep1
GSM1410372
R-Foxd3CKO-EtOH-H3K27me3 ChIP-rep1
GSM1410373
R-Foxd3CKO-EtOH-p300 ChIP-rep1
GSM1410374
R-Foxd3CKO-EtOH-IgG ChIP-rep2
GSM1410375
R-Foxd3CKO-EtOH-H3K4me1 ChIP-rep2
GSM1410376
R-Foxd3CKO-EtOH-H3K4me3 ChIP-rep2
GSM1410377
R-Foxd3CKO-EtOH-H3K27ac ChIP-rep2
GSM1410378
R-Foxd3CKO-EtOH-H3K27me3 ChIP-rep2
GSM1410379
R-Foxd3CKO-EtOH-p300 ChIP-rep2
GSM1410380
R-Foxd3CKO-Tam-IgG ChIP-rep1
GSM1410381
R-Foxd3CKO-Tam-H3K4me1 ChIP-rep1
GSM1410382
R-Foxd3CKO-Tam-H3K4me3 ChIP-rep1
GSM1410383
R-Foxd3CKO-Tam-H3K27ac ChIP-rep1
GSM1410384
R-Foxd3CKO-Tam-H3K27me3 ChIP-rep1
GSM1410385
R-Foxd3CKO-Tam-p300 ChIP-rep1
GSM1410386
R-Foxd3CKO-Tam-IgG ChIP-rep2
GSM1410387
R-Foxd3CKO-Tam-H3K4me1 ChIP-rep2
GSM1410388
R-Foxd3CKO-Tam-H3K4me3 ChIP-rep2
GSM1410389
R-Foxd3CKO-Tam-H3K27ac ChIP-rep2
GSM1410390
R-Foxd3CKO-Tam-H3K27me3 ChIP-rep2
GSM1410391
R-Foxd3CKO-Tam-p300 ChIP-rep2
GSM1410392
dY-Foxd3CKO-EtOH-IgG ChIP-rep1
GSM1410393
dY-Foxd3CKO-EtOH-H3K4me1 ChIP-rep1
GSM1410394
dY-Foxd3CKO-EtOH-H3K4me3 ChIP-rep1
GSM1410395
dY-Foxd3CKO-EtOH-H3K27ac ChIP-rep1
GSM1410396
dY-Foxd3CKO-EtOH-H3K27me3 ChIP-rep1
GSM1410397
dY-Foxd3CKO-EtOH-p300 ChIP-rep1
GSM1410398
dY-Foxd3CKO-EtOH-IgG ChIP-rep2
GSM1410399
dY-Foxd3CKO-EtOH-H3K4me1 ChIP-rep2
GSM1410400
dY-Foxd3CKO-EtOH-H3K4me3 ChIP-rep2
GSM1410401
dY-Foxd3CKO-EtOH-H3K27ac ChIP-rep2
GSM1410402
dY-Foxd3CKO-EtOH-H3K27me3 ChIP-rep2
GSM1410403
dY-Foxd3CKO-EtOH-p300 ChIP-rep2
GSM1410404
dY-Foxd3CKO-Tam-IgG ChIP-rep1
GSM1410405
dY-Foxd3CKO-Tam-H3K4me1 ChIP-rep1
GSM1410406
dY-Foxd3CKO-Tam-H3K4me3 ChIP-rep1
GSM1410407
dY-Foxd3CKO-Tam-H3K27ac ChIP-rep1
GSM1410408
dY-Foxd3CKO-Tam-H3K27me3 ChIP-rep1
GSM1410409
dY-Foxd3CKO-Tam-p300 ChIP-rep1
GSM1410410
dY-Foxd3CKO-Tam-IgG ChIP-rep2
GSM1410411
dY-Foxd3CKO-Tam-H3K4me1 ChIP-rep2
GSM1410412
dY-Foxd3CKO-Tam-H3K4me3 ChIP-rep2
GSM1410413
dY-Foxd3CKO-Tam-H3K27ac ChIP-rep2
GSM1410414
dY-Foxd3CKO-Tam-H3K27me3 ChIP-rep2
GSM1410415
dY-Foxd3CKO-Tam-p300 ChIP-rep2
GSM1572667
R-FCKO-Flag-rep3
GSM1572668
R-E2-Flag-rep3
GSM1572669
dY-FCKO-Flag-rep3
GSM1572670
dY-E2-Flag-rep3
GSM1572671
R-EtOH-IgG
GSM1572672
R-EtOH-HDAC1-rep1
GSM1572673
R-EtOH-Brg1-rep1
GSM1572674
R-EtOH-HDAC1-rep2
GSM1572675
R-EtOH-Brg1-rep2
GSM1572676
R-Tam-IgG
GSM1572677
R-Tam-HDAC1-rep1
GSM1572678
R-Tam-Brg1-rep1
GSM1572679
R-Tam-HDAC1-rep2
GSM1572680
R-Tam-Brg1-rep2
GSM1572681
dY-EtOH-IgG
GSM1572682
dY-EtOH-HDAC1-rep1
GSM1572683
dY-EtOH-Brg1-rep1
GSM1572684
dY-EtOH-HDAC1-rep2
GSM1572685
dY-EtOH-Brg1-rep2
GSM1572686
dY-Tam-IgG
GSM1572687
dY-Tam-HDAC1-rep1
GSM1572688
dY-Tam-Brg1-rep1
GSM1572689
dY-Tam-HDAC1-rep2
GSM1572690
dY-Tam-Brg1-rep2
GSM1572691
Mnase-R-EtOH-IgG
GSM1572692
Mnase-R-Tam-IgG
GSM1572693
Mnase-dY-EtOH-IgG
GSM1572694
Mnase-dY-Tam-IgG
GSM1572695
Mnase-R-EtOH-K4me1-rep1
GSM1572696
Mnase-R-EtOH-K4me1-rep2
GSM1572697
Mnase-R-Tam-K4me1-rep1
GSM1572698
Mnase-R-Tam-K4me1-rep2
GSM1572699
Mnase-dY-EtOH-K4me1-rep1
GSM1572700
Mnase-dY-EtOH-K4me1-rep2
GSM1572701
Mnase-dY-Tam-K4me1-rep1
GSM1572702
Mnase-dY-Tam-K4me1-rep2
This SuperSeries is composed of the following SubSeries:
GSE58317
Foxd3 binding at enhancers controls developmental timing of gene expression by regulation of histone acetylation [expression array]
GSE58407
Foxd3 binding at enhancers controls developmental timing of gene expression by regulation of histone acetylation [ChIP-seq]
Relations
BioProject
PRJNA252512
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
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File type/resource
GSE58408_RAW.tar
4.9 Gb
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