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Series GSE58225 Query DataSets for GSE58225
Status Public on Jun 07, 2014
Title A rat toxicogenomics study with Calcium Sensitizer EMD 82571 reveals a pleiotropic cause and adverse outcome pathway of teratogenicity
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary The aim of reprotoxicity testing is to reveal adverse effects of chemicals and drugs on reproduction and on pre and postnatal fetal development. There is very limited data available on gene expression profiling for elucidation of the teratogenic effects of nongenotoxic teratogens. Therefore, research was undertaken to obtain knowledge on the molecular effects of MSC1096199 (previously known as EMD 82571), a calcium sensitizer that was abandoned in the preclinical development phase due to its teratogenic effects in some foetuses. Pregnant wistar rats were dose daily with either MSC1096199 (50 or 150 mg/kg) or Retinoic acid (12 mg/kg) on gestational days 6-17. Microarray experiment were performed using four different tissues (maternal liver, embryo liver (GD20), embryo bone (GD20), and whole embryo (GD12)) under four different conditions (vehicle, low dose and high dose of MSC1096199 and Retinoic acid) to determine the drug regulated genes. In the high dose treatment group, approximately 58% of the fetuses showed malformations i.e. exencephaly and agnathia, and toxicogenomics evidenced that the genes critically involved in osteogenesis, odontogenesis and extra cellular matrix components to be significantly regulated by MSC1096199, therefore providing a molecular rational for the observed teratogenic effects.
 
Overall design Pregnant wistar rats were treated daily with the dose of either MSC1096199 (50 or 150 mg/kg) or Retinoic acid (12 mg/kg) on gestational days 6-17. Microarray experiment were performed using four different tissues (maternal liver, embryo liver, embryo bone, and whole embryo) under four different conditions (vehicle, low dose and high dose of MSC1096199 and Retinoic acid) to determine the drug regulated genes.
 
Contributor(s) Borlak J, Singh PK, Kumar A
Citation(s) 24977338
Submission date Jun 04, 2014
Last update date Mar 03, 2017
Contact name Juergen Borlak
E-mail(s) Borlak.Juergen@mh-hannover.de
Phone +49 511 532 7249
Organization name Hannover Medical School
Department Centre for Pharmacology and Toxicology
Lab Institute of Pharmaco- and Toxicogenomics
Street address Feodor-Lynen-Str. 35
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platforms (1)
GPL341 [RAE230A] Affymetrix Rat Expression 230A Array
Samples (22)
GSM1404337 SG01_Control_Embryo bone_20days
GSM1404338 SG02_Control_Embryo liver_20days
GSM1404339 SG03_Control_Maternal liver_20days
Relations
BioProject PRJNA251867

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58225_RAW.tar 149.2 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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