GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE49649
Query DataSets for GSE49649
Status
Public on Jul 16, 2014
Title
Metastasis-suppressor transcript destabilization through TARBP2 binding of mRNA hairpins
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Expression profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
25043050
Submission date
Aug 08, 2013
Last update date
May 15, 2019
Contact name
Hani Goodarzi
Organization name
UCSF
Department
Biochemistry and Biophysics
Street address
600 16th St, GH S312D
City
San Francisco
State/province
CA
ZIP/Postal code
94158
Country
USA
Platforms (3)
GPL6885
Illumina MouseRef-8 v2.0 expression beadchip
GPL10558
Illumina HumanHT-12 V4.0 expression beadchip
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
Samples (78)
Less...
More...
GSM1202553
MDA_0hr_1_1_RNA-seq
GSM1202554
MDA_0hr_1_2_RNA-seq
GSM1202555
MDA_0hr_2_1_RNA-seq
GSM1202556
MDA_0hr_2_2_RNA-seq
GSM1202557
MDA_2hr_1_1_RNA-seq
GSM1202558
MDA_2hr_1_2_RNA-seq
GSM1202559
MDA_2hr_2_1_RNA-seq
GSM1202560
MDA_2hr_2_2_RNA-seq
GSM1202561
MDA_4hr_1_1_RNA-seq
GSM1202562
MDA_4hr_1_2_RNA-seq
GSM1202563
MDA_4hr_2_1_RNA-seq
GSM1202564
MDA_4hr_2_2_RNA-seq
GSM1202565
MDA_7hr_1_1_RNA-seq
GSM1202566
MDA_7hr_1_2_RNA-seq
GSM1202567
MDA_7hr_2_1_RNA-seq
GSM1202568
MDA_7hr_2_2_RNA-seq
GSM1202569
LM2_0hr_1_1_RNA-seq
GSM1202570
LM2_0hr_1_2_RNA-seq
GSM1202571
LM2_0hr_2_1_RNA-seq
GSM1202572
LM2_0hr_2_2_RNA-seq
GSM1202573
LM2_2hr_1_1_RNA-seq
GSM1202574
LM2_2hr_1_2_RNA-seq
GSM1202575
LM2_2hr_2_1_RNA-seq
GSM1202576
LM2_2hr_2_2_RNA-seq
GSM1202577
LM2_4hr_1_1_RNA-seq
GSM1202578
LM2_4hr_1_2_RNA-seq
GSM1202579
LM2_4hr_2_1_RNA-seq
GSM1202580
LM2_4hr_2_2_RNA-seq
GSM1202581
LM2_7hr_1_1_RNA-seq
GSM1202582
LM2_7hr_1_2_RNA-seq
GSM1202583
LM2_7hr_2_1_RNA-seq
GSM1202584
LM2_7hr_2_2_RNA-seq
GSM1202585
Scrambled 1 (#T2)
GSM1202586
sRSE decoy 1 (#T4)
GSM1202587
Scrambled 2 (#T6)
GSM1202588
sRSE decoy 2 (#T8)
GSM1202593
TARBP2 knock-down (siTARBP2-1)
GSM1202594
TARBP2 knock-down (siTARBP2-2)
GSM1202595
Control (siControl-1)
GSM1202596
Control (siControl-2)
GSM1202607
TARBP2 knock-down (siTARBP2-1)_0hrs
GSM1202608
TARBP2 knock-down (siTARBP2-2)_0hrs
GSM1202609
TARBP2 knock-down (siTARBP2-1)_18hrs
GSM1202610
TARBP2 knock-down (siTARBP2-2)_18hrs
GSM1202611
Control (siControl-1)_0hrs
GSM1202612
Control (siControl-2)_0hrs
GSM1202613
Control (siControl-1)_18hrs
GSM1202614
Control (siControl-2)_18hrs
GSM1202656
Control (shControl-1)
GSM1202657
Control (shControl-2)
GSM1202658
Control (shControl-3)
GSM1202659
Control (shControl-4)
GSM1202660
ZNF395 knock-down (shZNF395-1)
GSM1202661
ZNF395 knock-down (shZNF395-2)
GSM1202662
ZNF395 knock-down (shZNF395-3)
GSM1202663
ZNF395 knock-down (shZNF395-4)
GSM1204357
TARBP2_CLIP_rep1
GSM1204358
TARBP2_CLIP_rep2
GSM1372027
TARBP2 knock-down (siTARBP2-1)_293T
GSM1372028
TARBP2 knock-down (siTARBP2-2)_293T
GSM1372029
Control (siControl)_293T
GSM1372075
TARBP2 knock-down (siTARBP2-1)_CN-LM1a
GSM1372076
TARBP2 knock-down (siTARBP2-2)_CN-LM1a
GSM1372077
Control (siControl-1)_CN-LM1a
GSM1372078
Control (siControl-2)_CN-LM1a
GSM1372079
TARBP2 over-expression (pCMV-TARBP2-1)_MDA-231
GSM1372080
TARBP2 over-expression (pCMV-TARBP2-2)_MDA-231
GSM1372081
Control (pCMV-GFP-1)_MDA-231
GSM1372082
Control (pCMV-GFP-2)_MDA-231
GSM1372083
TARBP2 knock-down (siTARBP2-1)_DICER-null MEF
GSM1372084
TARBP2 knock-down (siTARBP2-2)_DICER-null MEF
GSM1372085
Control (siControl-1)_DICER-null MEF
GSM1372086
Control (siControl-2)_DICER-null MEF
GSM1372087
Control (siControl-3)_DICER-null MEF
GSM1372088
TARBP2 knock-down (siTARBP2-1)_MDA-LM2-shDicer
GSM1372089
TARBP2 knock-down (siTARBP2-2)_MDA-LM2-shDicer
GSM1372090
Control (siControl-1)_MDA-LM2-shDicer
GSM1372091
Control (siControl-2)_MDA-LM2-shDicer
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE49608
Differential transcript stability measurements in MDA-MB-231 vs. MDA-LM2 cells
GSE49609
In-culture titration experiment for sRSE
GSE49611
Regulatory consequences of TARBP2 knock-down in MDA-LM2 cell-line
GSE49612
Regulatory consequences of TARBP2 knock-down in MDA-LM2 cell-line [stability experiment]
GSE49613
Regulatory consequences of ZNF395 knock-down in MDA-LM2-shTARBP2 cell-line
GSE49648
TARBP2 HITS-CLIP
GSE56945
Regulatory consequences of TARBP2 knock-down in293T cell-line
GSE56947
Regulatory consequences of TARBP2 knock-down in CN-LM1a cell-line
GSE56948
Regulatory consequences of TARBP2 over-expression in MDA-231 cell-line
GSE56949
Regulatory consequences of TARBP2 knock-down in Dicer-null MEFs
GSE56950
Regulatory consequences of TARBP2 knock-down in MDA-LM2-shDicer cell-line
Relations
BioProject
PRJNA214598
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE49649_RAW.tar
29.3 Mb
(http)
(custom)
TAR
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
Less...
More...