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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 31, 2013 |
| Title |
Analysis of expression and epigenetic changes in human colorectal cancer and matching mucosa tissues |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
Methylation profiling by genome tiling array
Genome binding/occupancy profiling by genome tiling array
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
24786786 |
| Submission date |
May 17, 2013 |
| Last update date |
Mar 15, 2019 |
| Contact name |
Xiwei Wu |
| E-mail(s) |
xwu@coh.org
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| Organization name |
City of Hope National Medical Center
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| Department |
Computational and Quantitative Medicine
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| Street address |
1500 E. Duarte Rd.
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| City |
Duarte |
| State/province |
CA |
| ZIP/Postal code |
91010 |
| Country |
USA |
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| Platforms (2) |
| GPL13118 |
NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [100718_HG18_CpG_Refseq_Prom_MeDIP] |
| GPL16686 |
[HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version] |
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| Samples (56)
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| GSM1144383 |
Colorectal tumor #8 |
| GSM1144384 |
Colorectal mucosa #12 |
| GSM1144385 |
Colorectal tumor #12 |
| GSM1144386 |
Colorectal mucosa #13 |
| GSM1144387 |
Colorectal tumor #13 |
| GSM1144388 |
H3K27me3, mucosa #6 |
| GSM1144389 |
H3K27me3, tumor #6 |
| GSM1144390 |
H3K27me3, mucosa #8 |
| GSM1144391 |
H3K27me3, tumor #8 |
| GSM1144392 |
H3K27me3, mucosa #12 |
| GSM1144393 |
H3K27me3, tumor #12 |
| GSM1144394 |
H3K27me3, mucosa #13 |
| GSM1144395 |
H3K27me3, tumor #13 |
| GSM1144396 |
H3K4me3, mucosa #6 |
| GSM1144397 |
H3K4me3, tumor #6 |
| GSM1144398 |
H3K4me3, mucosa #8 |
| GSM1144399 |
H3K4me3, tumor #8 |
| GSM1144400 |
H3K4me3, mucosa #12,exp#1 |
| GSM1144401 |
H3K4me3, tumor #12,exp1 |
| GSM1144402 |
H3K4me3, mucosa #12,exp#2 |
| GSM1144403 |
H3K4me3, tumor #12,exp#2 |
| GSM1144404 |
H3K4me3, mucosa #13 |
| GSM1144405 |
H3K4me3, tumor #13 |
| GSM1144406 |
5mC, mucosa #1 |
| GSM1144407 |
5mC, tumor #1 |
| GSM1144408 |
5mC, mucosa #2 |
| GSM1144409 |
5mC, tumor #2 |
| GSM1144410 |
5mC, mucosa #3 |
| GSM1144411 |
5mC, tumor #3 |
| GSM1144412 |
5mC, mucosa #4 |
| GSM1144413 |
5mC, tumor #4 |
| GSM1144414 |
5mC, mucosa #5 |
| GSM1144415 |
5mC, tumor #5 |
| GSM1144416 |
5mC, mucosa #6 |
| GSM1144417 |
5mC, tumor #6 |
| GSM1144418 |
5mC, mucosa #7 |
| GSM1144419 |
5mC, tumor #7 |
| GSM1144420 |
5mC, mucosa #8 |
| GSM1144421 |
5mC, tumor #8 |
| GSM1144422 |
5mC, mucosa #9 |
| GSM1144423 |
5mC, tumor #9 |
| GSM1144424 |
5mC, mucosa #10 |
| GSM1144425 |
5mC, tumor #10 |
| GSM1144426 |
5mC, mucosa #11 |
| GSM1144427 |
5mC, tumor #11 |
| GSM1144428 |
5mC, mucosa #12 |
| GSM1144429 |
5mC, tumor #12 |
| GSM1144430 |
5mC, mucosa #13 |
| GSM1144431 |
5mC, tumor #13 |
| GSM1144432 |
5mC, mucosa #14 |
| GSM1144433 |
5mC, tumor #14 |
| GSM1144434 |
5mC, mucosa #15 |
| GSM1144435 |
5mC, tumor #15 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE47074 |
Expression data for 4 colon tumor (Duke's stage II) /matching mucosa tissue pairs |
| GSE47075 |
Analysis of epigenetic changes in human colorectal cancer and matching mucosa tissues |
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| Relations |
| BioProject |
PRJNA203425 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE47076_RAW.tar |
1.8 Gb |
(http)(custom) |
TAR (of CEL, GFF, PAIR) |
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