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Series GSE46171 Query DataSets for GSE46171
Status Public on Aug 02, 2013
Title Asthmatics with exacerbation during acute respiratory illness exhibit unique transcriptional signatures.
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Acute respiratory illness (ARI) is the leading cause of asthma exacerbations yet the mechanisms underlying this association remain unclear. To address the deficiencies in our understanding of the molecular mechanisms driving ARI-induced asthma exacerbations, we undertook a transcriptional profiling study of the nasal mucosa over the course of ARI amongst individuals with a history of asthma, allergic rhinitis and no underlying respiratory disease. We found that ARI is characterized by dynamic, time-specific transcriptional profiles whose magnitudes of expression are influenced by underlying respiratory disease and the mucosal repair signature evoked during ARI. Most strikingly, we report that asthmatics that experience ARI-induced exacerbations are characterized by a reduced but prolonged inflammatory immune response, inadequate activation of mucosal repair and the expression of a newly described exacerbation-specific signature. Findings from our study represent a significant contribution towards clarifying the complex molecular interactions which typify ARI-induced asthma exacerbations.
 
Overall design Upon the onset of ‘common cold’, volunteers were instructed to attend the first of three required visits to the study clinic. The first and second visits were designed to obtain samples and clinical data during the early and late stages of symptomatic illness respectively, whereas the third visit would occur when volunteers were asymptomatic and serve as a prospective baseline (BL) for the study.
 
Contributor(s) McErlean P, Berdnikovs S, Favoreto S Jr, Shen J, Biyasheva A, Barbeau R, Eisley C, Barczak A, Ward T, Schleimer RP, Erle DJ, Boushey HA, Avila PC
Citation(s) 24433494
Submission date Apr 18, 2013
Last update date Jan 23, 2019
Contact name Peter McErlean
Organization name Northwestern University
Department Allergy Immunology
Lab Avila
Street address 240 E. Huron, McGaw M-530h
City Chicago
State/province Illinois
ZIP/Postal code 60613
Country USA
 
Platforms (2)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
GPL16981 Agilent-020087 human whole genome 4x44K (Probe Name version)
Samples (91)
GSM1125390 NATURI_01_Nasal mucosa_Healthy_baseline
GSM1125391 NATURI_02_Nasal mucosa_Healthy_baseline
GSM1125392 NATURI_03_Nasal mucosa_Healthy_baseline
Relations
BioProject PRJNA197489

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46171_RAW.tar 175.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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