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Series GSE4462 Query DataSets for GSE4462
Status Public on May 01, 2006
Title Changed gene profile in inv cystic kidney
Organism Mus musculus
Experiment type Expression profiling by array
Summary Nephronophthisis (NPHP) is a group of progressive renal disorders characterized by a variable number of cysts associated with cortical tubular atrophy. Recently, mutations in INV have been identified to be responsible for NPHP2. The inv/inv,inv-deltaC::GFP mouse that was created by introduction of inv gene lacking the C-terminus (inv-deltaC) into inv/inv mice develops multiple renal cysts without situs abnormality. Renal cyst progression was dependent on expression level of inv-deltaC transgene, suggesting that inv protein functions in a dose-dependent manner. Cell proliferation and apoptosis were increased in the inv-deltaC cystic kidneys. We searched up- and down-regulated genes during cyst development and progression using cDNA microarray.

See appended table for comparison analysis of inv/inv,inv-deltaC::GFP vs +/+,inv-deltaC::GFP (GSM100334 vs GSM100335).
Keywords: apoptosis, cell proliferation, gene expression, inv, inversin, polycystic kidney disease
 
Overall design Comparison of gene expression in each two kidneys in 4-week-old inv-deltaC and control mice was carried out by the KURABO Industries, Biomedical Department
 
Citation(s) 16999740
Submission date Mar 14, 2006
Last update date Feb 11, 2019
Contact name Noriyuki Sugiyama
E-mail(s) nsugi@koto.kpu-m.ac.jp
Fax 81-75-251-5304
URL http://www2.kpu-m.ac.jp/%7Eanat2/index.html
Organization name Kyoto Prefectural University of Medicine
Department Anatomy and Developmental Biology
Street address Kawaramachi-dori, Hirokouji-agaru,Kamigyo-ku
City Kyoto
State/province Kyoto
ZIP/Postal code 6028566
Country Japan
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (2)
GSM100334 +/+,inv-deltaC::GFP
GSM100335 inv/inv, inv-deltaC::GFP
Relations
BioProject PRJNA94387

Table 1. Comparison analysis: GSM100334 vs GSM100335 header descriptions
ID_REF
Signal Log Ratio
Signal Log Ratio Low
Signal Log Ratio High
Change
Change p-value

Data table
ID_REF Signal Log Ratio Signal Log Ratio Low Signal Log Ratio High Change Change p-value
AFFX-BioB-5_at -0.2 -0.4 0 NC 0.5
AFFX-BioB-M_at -0.2 -0.3 0 NC 0.5
AFFX-BioB-3_at -0.1 -0.3 0 NC 0.5
AFFX-BioC-5_at -0.2 -0.3 -0.1 NC 0.671321
AFFX-BioC-3_at -0.1 -0.3 0 NC 0.5
AFFX-BioDn-5_at -0.2 -0.3 -0.1 NC 0.994247
AFFX-BioDn-3_at -0.1 -0.2 0 NC 0.5
AFFX-CreX-5_at -0.2 -0.2 -0.1 NC 0.5
AFFX-CreX-3_at 0 -0.1 0.1 NC 0.5
AFFX-DapX-5_at 0 -0.2 0.1 NC 0.5
AFFX-DapX-M_at 0 -0.1 0.1 NC 0.5
AFFX-DapX-3_at -0.1 -0.2 0 NC 0.5
AFFX-LysX-5_at 0 -0.3 0.3 NC 0.5
AFFX-LysX-M_at 0 -0.1 0.2 NC 0.5
AFFX-LysX-3_at -0.1 -0.4 0.1 NC 0.5
AFFX-PheX-5_at -0.1 -0.3 0.2 NC 0.590372
AFFX-PheX-M_at 0 -0.2 0.2 NC 0.5
AFFX-PheX-3_at 0 -0.2 0.2 NC 0.5
AFFX-ThrX-5_at 0 -0.2 0.2 NC 0.5
AFFX-ThrX-M_at 0 -0.1 0.1 NC 0.5

Total number of rows: 45101

Table truncated, full table size 1514 Kbytes.




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