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| Status |
Public on Sep 17, 2013 |
| Title |
Focal Adhesion Kinase Dependent Expression |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
The goal of this study was to identify transcripts, which are differentially regulatulated in the presence and absence of Focal Adhesion Kinase. As Focal Adhesion Kinase activity can depend upon cell density (Snijder et al. Nature 2009), biological replicates where cells, were seeded very sparsely or confluently, were used.
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| Overall design |
Focal Adhesion Kinase Knockout (ATCC CRL-2644) and Rescue Cells (Sieg et al. 1998, clone DA2) were seeded at two different concentrations. Replicas refer to biological replicates, performed on different days. Only one single technical replicate has been done per biological replicate.
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| Contributor(s) |
Stoeger T, Snijder B, Patrignani A |
| Citation(s) |
24097268 |
| Submission date |
Jan 29, 2013 |
| Last update date |
Jan 12, 2017 |
| Contact name |
Berend Snijder |
| Organization name |
University of Zurich
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| Department |
IMLS
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| Lab |
Pelkmans Lab
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| Street address |
Winterthurerstrasse 190
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| City |
Zurich |
| ZIP/Postal code |
CH-8057 |
| Country |
Switzerland |
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| Platforms (1) |
| GPL7202 |
Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version) |
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| Samples (12)
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| GSM1072615 |
FAK Rescue, sparse, Experimental Day July9th |
| GSM1072616 |
FAK Rescue, dense, Experimental Day July9th |
| GSM1072617 |
FAK KO, sparse, Experimental Day July9th |
| GSM1072618 |
FAK KO, dense, Experimental Day July9th |
| GSM1072619 |
FAK Rescue, sparse, Experimental Day July11th |
| GSM1072620 |
FAK Rescue, dense, Experimental Day July11th |
| GSM1072621 |
FAK KO, sparse, Experimental Day July11th |
| GSM1072622 |
FAK KO, dense, Experimental Day July11th |
| GSM1072623 |
FAK Rescue, sparse, Experimental Day July12th |
| GSM1072624 |
FAK Rescue, dense, Experimental Day July12th |
| GSM1072625 |
FAK KO, dense, Experimental Day July12th |
| GSM1072626 |
FAK KO, sparse, Experimental Day July12th |
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| Relations |
| BioProject |
PRJNA187977 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE43873_RAW.tar |
26.2 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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