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Series GSE42242 Query DataSets for GSE42242
Status Public on Nov 01, 2013
Title SMAD4 regulated through HDAC4 is associated with chemoresistance in MCF-7 cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary HDACs play crucial role in epigenetic modulation through deacetylation of histone and non-histone substrates in critical process of normal development and cancer. Moreover, HDAC inhibitors have been considered as new agent by effects such as cell cycle arrest, apoptosis, anti-angiogenic effects and autophagy and utilized in clinical applications for chemotherapy. we previously reported that HDAC 1, 4, 6 and 8 were higly expressed in MDA-MB-231 than MCF-7 cells and HDAC1, 6 and 8 excepting HDAC4 were associated with invasion that is very important factor in cancer progression. However, HDAC4 did not affect in invasion. To investigate interaction between chemoresistance and HDAC4 expression, we establish stable cells overexpressing HDAC4 in MCF-7 cells. Cells overexpressed HDAC4 were increased cytotoxicity about 5-FU and identified 356 differentially expressed genes using Ilumina array. Based on array result, we selected SMAD4 as a candidate gene related with chemoresistance because SMAD4 was previously reported evaluation of chemoresistance to 5-FU. We purpose that HDAC4 regulated with SMAD4 expression through acetylation in SMAD4 promoter region. HDAC4 directly bound a part of SMAD4 promoter.
 
Overall design Total RNA obtained from cells overexpressed HDAC4 cDNA in MCF-7 compared to control cells.
 
Contributor(s) Yu SL, Kang J
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Submission date Nov 13, 2012
Last update date Aug 13, 2018
Contact name Seong-Lan Yu
E-mail(s) yusl73@hanmail.net
Phone 82-42-600-8649
Organization name Konyang university
Department Myunggok Medical Research Institute
Street address Gasuwon-dong
City Daejeon
ZIP/Postal code 35365
Country South Korea
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (8)
GSM1036168 control transfected pcDNA 1
GSM1036169 control transfected pcDNA 2
GSM1036170 control transfected pcDNA 3
Relations
BioProject PRJNA180985

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42242_RAW.tar 26.2 Mb (http)(custom) TAR
GSE42242_non-normalized.txt.gz 2.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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