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Series GSE42189 Query DataSets for GSE42189
Status Public on Nov 01, 2013
Title The Cytokines Interleukin-1 and Interferon-gamma Differentially Program Beta-glucan–activated Dendritic Cells via IkappaB-zeta Modulation
Organism Homo sapiens
Experiment type Expression profiling by array
Summary To evaluate the DC genome-wide gene expression in response to beta-glucan and its regulation by IL-1 receptor antagonist (IL-1RA) we used a whole genome microarray. The gene expression profiling was performed in DC left untreated or exposed to beta-glucan for 4 and 12 h, in absence or presence of IL-1RA. This strategy allowed the identification of early/immediate and late/secondary genes regulated by beta-glucan in an IL-1-dependent and -independent manner. Human monocyte-derived DC were obtained by a 6/7-d cultures of freshly isolated monocytes with recombinant human IL-4 (10 ng/ml) and GM-CSF (50 ng/ml).
 
Overall design Beta-glucan-associated gene expression and its regulation by IL-1RA in human DC was measured in cells left untreated or at 4 and 12 h after exposure to 10 ug/ml of particulate beta-glucan in absence or presence of 2.5 ug/ml of IL-1RA. Five different conditions (Untreated 0h, beta-glucan 4h, IL-1RA + beta-glucan 4h, beta-glucan 12h, and IL-1RA + beta-glucan 12h) were tested using DC from three different donors.
 
Contributor(s) Trinchieri G, Cardone M
Citation(s) 25474109
Submission date Nov 09, 2012
Last update date Oct 17, 2019
Contact name Marco Cardone
E-mail(s) cardonem@mail.nih.gov
Phone 3012284387
Organization name NCI/NIH
Department CIP
Street address 1050 Boyles Street
City Frederick
State/province MD
ZIP/Postal code 21702
Country USA
 
Platforms (1)
GPL6480 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Probe Name version)
Samples (15)
GSM1034554 Donor A Untr
GSM1034555 Donor A 4h B-glucan
GSM1034556 Donor A 12hr B-glucan
Relations
BioProject PRJNA179266

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42189_RAW.tar 118.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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