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| Status |
Public on Jun 19, 2015 |
| Title |
Correlation between DNase I hypersensitive site distribution and gene expression in HeLa S3 cells [Illumina arrays] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
We explored the relationship between the distribution of DNase I hypersensitive site(DHSs) and levels of gene expression. Expression values from 5 to 11 are raw log2 ratio-transformed data from gene expression arrays. We found that the distribution of DHSs in promoter region and CpG islands is positively correlated with gene expression levels and 3’UTR DHSs are negatively correlated with active expression of genes.
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| Overall design |
Total RNA obtained from HeLa S3 cells.
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| Contributor(s) |
Zhang Y, Wang Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jun 25, 2012 |
| Last update date |
Aug 13, 2018 |
| Contact name |
Yu-Xiang Zhang |
| Organization name |
Capital Medical University, China
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| Department |
Biochemistry
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| Lab |
Cancer Genomics
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| Street address |
Fengtai-District,You-An-Men-Wai
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| City |
Beijing |
| ZIP/Postal code |
100069 |
| Country |
China |
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| Platforms (1) |
| GPL10558 |
Illumina HumanHT-12 V4.0 expression beadchip |
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| Samples (1) |
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| This SubSeries is part of SuperSeries: |
| GSE38915 |
Correlation between DNase I hypersensitive site distribution and gene expression in HeLa S3 cells |
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| Relations |
| BioProject |
PRJNA169334 |
