 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Nov 01, 2012 |
| Title |
Genome-wide analysis of Human Upf1, SMG5, SMG7 and PNRC2 downregulated substrates in HeLa cell |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Analysis of cellular NMD (Nonsense-mediated mRNA decay) substrates that regulated by Upf1, SMG5, SMG7 and/or PNRC2 in HeLa cell. The hypothesis tested in the present study was that endogenous NMD substrates may co-regulated by Upf1, SMG5, SMG7 and PNRC2.
|
| |
|
| Overall design |
Total RNA obtained from HeLa cells with downregulation of Upf1, SMG5, PNRC2 or SMG7 by siRNA. The up- or down-regulated transcripts were compare to control siRNA treated HeLa cell RNA extract. Significant transcripts were confirmed by replication
|
| |
|
| Contributor(s) |
Cho H, Han S, Choe J |
| Citation(s) |
23234702 |
| Submission date |
Jan 05, 2012 |
| Last update date |
Aug 13, 2018 |
| Contact name |
Hana Cho |
| E-mail(s) |
sweet-akasia@hanmail.net
|
| Phone |
82-2-3290-3919
|
| Organization name |
Korea University
|
| Department |
School of Life Sciences and Biotechnology
|
| Lab |
Molecular Genomics
|
| Street address |
Anam 5ga, Sungbukku
|
| City |
Seoul |
| ZIP/Postal code |
136-701 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL10558 |
Illumina HumanHT-12 V4.0 expression beadchip |
|
| Samples (10)
|
|
| Relations |
| BioProject |
PRJNA150109 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE34876_RAW.tar |
26.2 Mb |
(http)(custom) |
TAR |
| GSE34876_non-normalized.txt |
9.0 Mb |
(ftp)(http) |
TXT |
| Processed data included within Sample table |
|
|
|
|
 |
Less...
More...