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Series GSE28656 Query DataSets for GSE28656
Status Public on Apr 15, 2011
Title Genes regulated by Nkx2-3 in human intestinal microvascular endothelial cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Nkx2-3 is associated with inflammatory bowel disease (IBD). Nkx2-3 is expressed in microvascular endothelial cells and the muscuularis mucosa of the gastrointestinal tract. Human intestinal microvascular cells (HIMEC) are actively involved in the pathogenesis of IBD and IBD-associated microvascular dysfunction. To understand the cellular function of Nkx2-3 and its potential role underlying IBD pathogenesis, we investigated the genes regulated by Nkx2-3 in HIMEC usin cDNA microarray.
 
Overall design 2 HIMEC lines (21B and 432) are used in thi study. For each HIMEC lines, either si-Nkx2-3 or contro vector was transfected 2 times to get biological replicates.
 
Contributor(s) Yu W, Hegarty JP, West G, Chen X
Citation(s) 21637825
Submission date Apr 15, 2011
Last update date Aug 13, 2018
Contact name wei yu
E-mail(s) weiyu@hmc.psu.edu
Organization name pennsylvania state university
Street address 500 university drive
City hershey
ZIP/Postal code 17033
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (8)
GSM709981 21B vector--rep1
GSM709982 21B vector--rep2
GSM709983 21B siRNA-Nkx2-3--rep1
Relations
BioProject PRJNA138855

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28656_Knockdown21BvsControl21B.csv.gz 2.1 Mb (ftp)(http) CSV
GSE28656_Knockdown432vsControl432.csv.gz 2.1 Mb (ftp)(http) CSV
GSE28656_RAW.tar 26.2 Mb (http)(custom) TAR
GSE28656_Sample3vsSample1_foldchange.csv.gz 1.2 Mb (ftp)(http) CSV
GSE28656_Sample4vsSample2_foldchange.csv.gz 1.2 Mb (ftp)(http) CSV
GSE28656_Sample7vsSample5_foldchange.csv.gz 1.2 Mb (ftp)(http) CSV
GSE28656_Sample8vsSample6_foldchange.csv.gz 1.2 Mb (ftp)(http) CSV
GSE28656_non-normalized_data.txt.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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