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Series GSE2727 Query DataSets for GSE2727
Status Public on May 26, 2007
Title Differential gene expression in diffusely infiltrating astrocytic
Organism Homo sapiens
Experiment type Expression profiling by array
Summary This study aims at investigating differential gene expression in human diffusely infiltrating astrocytic tumours, grades II, III and IV. A total of 63 tumours were assessed using the Affymetrix U133A GeneChip. Samples comprised in this GEO submission are identical to those in submission GSE1993 with the exception of two pilocytic astrocytoma tumours (grade I) that have not been included. The study aims not only at discovering the main expression differences between astrocytic tumours of distinct histological grades but also wishes to correlate these findings with the known histopathological and biological hallmarks of astrocytoma progression. Further, the study aims at correlating gene expression with previously obtained genomic information for several loci known to be involved in astrocytoma tumour progression.
Keywords: other
 
Overall design A total of 63 tumours were assessed using the Affymetrix U133A GeneChip.
 
Contributor(s) Petalidis L, Wayland M, Freeman T, Collins VP
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date May 31, 2005
Last update date Aug 10, 2018
Contact name Lawrence Petalidis
E-mail(s) petalidisl@hotmail.com
Phone 0044 1223 762084
Organization name University of Cambridge
Street address
City Cambridge
ZIP/Postal code CB2 2QQ
Country United Kingdom
 
Platforms (1)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
Samples (63)
GSM35734 GB238
GSM35735 A48
GSM35737 AA86
Relations
BioProject PRJNA92239

63 tumour submission, May 2005 header descriptions
GEO sample ID
GSM35745
GSM35776
GSM35773
GSM35738
GSM35739
GSM35740
GSM35741
GSM35742
GSM35743
GSM35746
GSM35747
GSM35748
GSM35750
GSM35751
GSM35752
GSM35735
GSM35753
GSM35754
GSM35755
GSM35757
GSM35758
GSM35759
GSM35760
GSM35762
GSM35763
GSM35764
GSM35765
GSM35766
GSM35767
GSM35768
GSM35770
GSM35771
GSM35772
GSM35774
GSM35775
GSM35777
GSM35778
GSM35780
GSM35781
GSM35782
GSM35783
GSM35784
GSM35785
GSM35786
GSM35787
GSM35788
GSM35789
GSM35790
GSM35791
GSM35792
GSM35793
GSM35794
GSM35797
GSM35798
GSM35737
GSM35756
GSM35779
GSM35796
GSM35734
GSM35744
GSM35749
GSM35761
GSM35795

Data table
GEO sample ID GSM35745 GSM35776 GSM35773 GSM35738 GSM35739 GSM35740 GSM35741 GSM35742 GSM35743 GSM35746 GSM35747 GSM35748 GSM35750 GSM35751 GSM35752 GSM35735 GSM35753 GSM35754 GSM35755 GSM35757 GSM35758 GSM35759 GSM35760 GSM35762 GSM35763 GSM35764 GSM35765 GSM35766 GSM35767 GSM35768 GSM35770 GSM35771 GSM35772 GSM35774 GSM35775 GSM35777 GSM35778 GSM35780 GSM35781 GSM35782 GSM35783 GSM35784 GSM35785 GSM35786 GSM35787 GSM35788 GSM35789 GSM35790 GSM35791 GSM35792 GSM35793 GSM35794 GSM35797 GSM35798 GSM35737 GSM35756 GSM35779 GSM35796 GSM35734 GSM35744 GSM35749 GSM35761 GSM35795
PETALIDIS Tumour ID GB12 A26 GB139 GB1 GB97 GB69 GB11 GB28 A9 AA3 GB2 GB32 GB227 GB213 GB100 A48 GB102 AA100 AA92 AA2 GB22 GB17 AA101 GB131 AA73 AA76 GB63 GB133 GB55 AA18 GB56 GB135 GB136 AA20 AA19 GB81 GB82 AA105 A36 AA29 A30 AA106 GB84 GB87 GB44 GB154 AA15 GB153 GB126 GB35 AA14 GB50 GB49 GB130 AA86 AA93 AA13 AA49 GB238 GB103 GB3 GB101 GB245
Probe set ID
1007_s_at 11.14965454 10.87313579 10.98433099 11.61842222 12.05339873 11.5570957 12.25091557 11.53523358 11.82314818 11.50997328 11.4121494 11.54682254 11.20544439 11.85768313 11.109992 11.22818698 11.81683614 11.69549124 11.63575782 11.54672329 11.28956691 11.12548528 11.639752 11.47875646 10.81261637 12.09180772 12.06995652 11.52545445 11.45673981 10.44187493 11.0902188 10.77148013 11.19896783 12.31157175 12.03834439 11.11407022 11.61808509 11.49624555 11.00434094 11.52992455 11.1995724 10.61318691 11.46302585 11.42432637 11.2356448 10.98034492 11.35333898 11.76506624 9.221054254 10.32093375 10.89017399 10.83300277 10.98325651 11.22416123 11.05411953 11.44793805 11.51914538 11.26935631 11.16397622 11.53369734 11.65974263 11.51407075 10.80396049
1053_at 6.457424135 5.681656125 6.04900113 5.939100801 5.957652411 6.618484777 6.228611632 6.615565903 6.058881972 5.473757322 5.759041363 6.284223593 5.653035679 6.368796415 7.223168485 5.720292226 5.952158659 5.800246133 6.193190095 5.920345318 6.100564158 6.405322087 5.686036838 6.353895956 5.730870371 6.299339898 6.12317771 6.552362547 6.022842555 5.916081961 6.034741923 6.172926883 6.556781613 5.663039358 5.916215672 6.272500145 6.776331323 5.858279139 5.873422949 6.360373496 5.763921954 5.658955614 6.187888707 6.024887264 6.465637992 6.289405841 5.5394647 7.234886755 7.103744698 6.571962081 6.186321126 6.047203441 6.842796108 6.166090371 6.204173538 6.523296109 6.064454687 6.16292945 6.087678036 6.808818225 6.112644979 6.074144942 5.466104334
117_at 5.692810789 5.608239151 6.159363183 6.135826863 5.815203341 5.564063471 5.470119575 5.736060485 5.689293636 5.607345646 6.771130565 5.859553206 5.833419945 5.790337099 5.85073681 5.650662467 5.974676905 5.652031271 5.622253034 5.422411821 5.884578193 6.102276695 5.899007625 6.04730387 5.832587902 5.825564832 6.083609337 5.939392382 6.026840851 6.093668014 5.748110025 6.079051609 5.608987315 5.76005566 5.688194982 6.352037264 5.524155888 5.640682918 5.778318098 6.306597191 5.787356614 5.663517374 6.128645643 5.879673672 6.127381801 5.596067036 5.685238378 6.218805106 5.798230469 6.157482391 5.695758662 5.712574427 6.0278133 6.084857801 6.203362089 5.830760605 5.850471752 5.793223598 5.879740188 5.532567809 5.592390617 6.08538608 6.070319443
121_at 8.237448743 8.183578365 7.818220171 7.953569251 8.233299057 8.109677539 7.956135847 8.107056874 8.17692391 8.202695308 8.127907077 7.971436051 8.085778657 7.966062176 8.124935373 8.188292998 8.346211943 8.316405398 7.921559797 8.161789746 8.168138049 8.001031075 8.170242109 8.092266176 8.098403182 7.948644742 8.086748927 7.947086115 8.239239002 8.129750742 8.175536547 8.102529318 8.26792255 8.403172674 8.122357316 8.101606026 7.834559548 8.221562125 8.333326311 7.853313183 8.128000668 7.959359135 8.199092681 8.388954991 7.812803303 7.911716829 8.011712541 8.125435768 7.933811219 8.162156992 8.03222371 7.768340975 7.838833157 8.171485762 8.229437249 8.447201511 8.350296956 8.094750395 8.493585367 8.32709993 8.328054462 8.138114044 8.292766951
1255_g_at 4.276547556 3.837973659 3.810633562 3.706003227 3.845971008 3.895575485 3.830818919 3.890963766 3.911259256 3.917720742 3.870404399 4.039227604 3.901240061 3.997273187 4.047054695 4.028101513 3.843963373 3.84035521 3.865377037 3.865118017 3.95804646 4.089030225 3.857587171 3.748679057 4.027196664 3.765450352 3.717764117 3.889864463 3.98362102 3.811149434 3.953218674 4.230949604 3.855316006 3.978618356 3.976585729 3.880253044 3.934592657 3.896532654 3.828973817 3.819555388 3.692922043 3.856925742 3.861759251 3.75890229 3.736315425 3.740235921 3.772522222 3.842890538 3.923939719 3.802724801 3.913846947 3.776963979 3.755515319 3.861214224 3.881659219 4.138189111 3.775574939 3.863259052 3.717312122 3.846284103 4.076036419 3.625131449 3.871105686
1294_at 6.932326116 6.882176852 7.330199954 7.812779943 7.237964213 6.95999496 7.066050577 6.801805443 7.268738499 7.174888772 7.681470044 7.144509351 7.037333116 6.920710753 7.636528373 7.190288093 7.309271633 7.29170424 6.824863362 6.984569955 7.104754825 7.612412885 7.401319746 7.298933906 7.53409595 7.078350382 7.227263166 7.020284944 7.198649076 7.076271275 6.875245464 7.021731697 7.066995274 7.419033595 7.45037323 7.449843996 6.689311546 7.202081731 7.433281393 7.364635627 6.916811174 6.8247131 7.370346004 7.484319211 8.072122163 6.986900893 7.312617032 8.038061227 6.887415591 7.126377189 7.533666358 7.499360894 7.40993408 7.935936992 7.191870675 7.322293513 7.979984907 7.506391128 7.439028147 6.920843335 7.120014608 7.185327549 7.375336902
1316_at 5.074872608 5.146861373 5.10264517 4.999003019 4.936624953 4.88971256 5.061748752 4.852772033 5.445931537 5.414125557 5.174209082 4.952786057 4.944101367 4.968244298 4.958875893 5.20895317 4.961100834 5.198732212 4.900510001 5.124006773 5.238303453 4.944408322 5.115712152 4.85694705 5.161768037 4.941334434 4.96040105 4.92072592 5.183310988 4.940117022 5.069954509 5.049785187 4.873273182 4.989283868 5.064657834 5.013862131 4.973717396 5.070394526 5.351431079 5.06215671 5.116901711 5.182088037 5.08319855 4.695606979 4.914828749 4.935279867 5.156881482 4.987960536 4.875053172 4.837821757 5.167187817 4.849818069 4.74645548 5.119378132 5.155280023 4.862656165 5.443284704 5.011065309 4.893486947 4.96419259 5.226656414 5.00514804 5.23077166
1320_at 4.440060303 4.38483258 4.403735122 4.551426768 4.760745423 4.407885208 4.423103745 4.474416404 4.362398156 4.43050828 4.401260462 4.297097882 4.420136456 4.718566444 4.51587313 4.476875662 4.518038977 4.637570363 4.230140299 4.424993084 4.385914477 4.537148361 4.440820911 4.294088475 4.395745086 4.491263317 4.426492943 4.276540291 4.42337373 4.558095217 4.457223455 4.352146589 4.529263811 4.606398992 4.50256203 4.524988255 4.382862855 4.563989195 4.680545129 4.726626577 4.519248751 4.275945221 4.362655666 4.587646317 4.177446868 4.460055736 4.508155561 4.574321101 4.669811951 4.412847989 4.355236679 4.569439015 4.449605537 4.505746066 4.551169902 4.298023256 4.229478076 4.371965881 4.354551693 4.329803645 4.273781612 4.283808585 4.324771608
1405_i_at 4.201123419 4.226371661 4.500885764 5.873429231 4.102712181 4.355376947 4.118296693 4.505519936 4.233941915 4.338570908 4.4711506 4.013716231 4.347315615 4.365036508 4.449484411 4.328646274 4.317740888 4.225540752 4.368102872 4.305619753 4.32145503 4.323358224 4.463360127 4.186475141 4.5257683 4.09841316 4.376632322 4.304265012 4.041504419 4.139758279 4.279138328 4.373309603 4.414536861 5.021160602 4.162617205 4.687162283 3.964346146 4.25469714 4.519846807 4.606228786 4.354785054 4.284085751 4.29867012 4.350182193 4.863500269 3.928256818 3.857244972 4.68038179 4.134643648 4.407095267 4.28019032 3.936116461 4.867163816 4.376292912 4.243749256 4.084650849 4.298022864 4.190709516 4.415455101 4.048114772 4.156289344 4.223415063 4.865846833
1431_at 3.720671954 3.846098065 3.80766327 3.738140348 3.693367828 3.551814332 3.747108354 3.759857123 3.720410943 3.912697647 3.633767198 3.616477798 3.774737249 3.723534933 3.613948636 4.040401552 3.827549602 3.86506464 3.610222848 3.846425041 3.842223544 3.798295318 4.086993172 3.699300304 3.847814643 3.680562775 3.808371644 3.735908211 3.730294932 3.699718816 3.769190729 3.624255627 3.786653702 3.727962503 3.904393672 3.727056584 3.520640147 3.899461342 4.020433982 3.951020075 3.759610545 3.989813165 3.791296566 3.659768212 3.711693278 3.793370812 3.996910213 3.786721948 3.674769685 3.674004454 3.794069566 3.681175746 3.725699871 3.723528389 3.792984544 3.670746837 4.609749885 3.794216161 3.695497099 3.65662316 3.830591932 3.622371987 3.743731667
1438_at 6.754682442 6.30467763 6.657297214 6.311044625 6.695910419 6.840162035 6.720381532 6.381916894 7.173558883 6.210360737 6.365939762 6.532854727 6.450550542 7.218218823 6.388495801 6.34692746 6.837037377 6.81165963 7.012517079 7.051276495 6.70969643 6.887628538 6.764393492 6.411802637 6.451631441 6.315748954 6.578424781 6.818257741 6.562123664 6.891759888 6.630595982 6.388131517 6.916716154 6.524297944 6.85367838 6.354274895 9.651673399 6.685720484 6.811088404 6.825637184 6.654020221 6.281345947 6.559187264 6.734434444 6.232505641 6.723887934 6.602796548 6.675605908 6.485827103 6.56973738 6.791706581 8.03328759 6.564526266 6.848182158 6.919915962 6.942209047 6.296595545 6.550058926 6.244346766 6.779487935 6.304692538 6.379620228 6.147359526
1487_at 6.790990101 6.775880985 7.306507808 6.808584937 6.6078563 6.774043168 6.541176599 6.564934958 6.923560533 6.865737299 6.867269505 6.613902584 7.023032854 6.841656886 6.797186737 6.872504151 6.893129502 6.859763997 6.755479646 6.914915365 6.905482019 6.86619997 6.820009709 6.791623256 7.278384837 6.491794821 7.073299198 7.020726736 7.055060247 7.209756078 7.064225897 6.955292085 6.677860822 7.030130995 7.131803054 6.84985272 6.556171173 6.739246329 6.775384555 6.557833595 6.940577143 6.857117948 6.837277711 6.935704234 6.709846099 6.622152029 6.718688096 6.674567424 7.091576383 6.765753761 6.910380353 6.615404084 6.947527454 6.804619788 7.03154916 7.195712303 7.100224566 6.970505261 6.893149476 6.556621859 6.83972204 6.931979427 7.200314285
1494_f_at 6.079341359 5.818250385 5.565437485 5.800968714 5.827608425 5.644905466 5.770408147 5.812722665 5.88189951 6.161586576 5.819738094 5.711859971 6.203546366 6.005169737 5.766385676 6.03936935 6.032525849 6.108993894 5.768147612 6.066350161 6.138164452 5.928126679 5.912198933 5.61775652 5.786110289 5.556434512 5.872490958 5.484337622 5.733843346 5.804107534 5.754393398 5.884929728 5.76494472 6.07784268 6.009611878 5.729570503 5.607978696 5.861765206 5.910662477 5.654748345 6.089801373 5.907682447 5.749221998 5.539236743 5.550002496 5.596643269 5.695860576 5.872534058 5.920461991 5.856185853 5.854018486 5.536751285 5.684349985 5.73288357 5.886821582 5.804754475 5.837504675 5.914823338 5.66849245 5.658592183 5.72905359 5.652223929 5.736064989
1598_g_at 8.660315017 8.568911184 9.309285671 9.881504581 8.591650283 8.616072667 8.419015974 8.564093264 9.004509431 9.117607767 9.006749166 8.783025145 8.831091878 8.948037596 8.707533259 8.807726971 9.032729568 8.759416758 8.496571714 8.806620102 8.836988865 8.433893647 9.374208166 9.280770382 8.535547601 10.12498775 9.359527275 8.680099924 9.274406719 8.522218653 9.01636167 8.610835977 8.757314624 9.05527279 9.079829736 9.067442085 8.208139379 8.6504632 9.233707209 9.680509168 9.040913693 8.619106966 8.838484517 8.504482324 9.338408784 8.23110811 8.927421602 9.35467477 8.310126135 8.561416349 8.828170336 11.88212425 10.34266563 9.621625012 9.183323315 8.883676721 9.007315583 8.912751332 9.290150178 8.91656038 8.856319563 9.16863885 8.889874155
160020_at 7.547741331 7.065691656 7.391383191 7.251549811 7.533426987 7.355568232 7.026226234 7.02976086 7.449844997 7.187382628 7.285938972 7.350794813 7.421289462 7.564915725 7.691755374 7.478672718 7.732393523 7.308161763 7.261923494 7.572822254 7.341526292 7.209266509 7.210256885 7.217006253 7.11575678 7.486623477 7.479488807 7.361409395 7.491872745 7.419478128 7.366975184 7.493213675 7.177615083 7.880136999 7.394970177 7.442645784 7.214375337 7.026292518 7.285536095 7.488308536 7.110197031 7.070854025 7.392124384 7.827490762 7.407781711 7.01444916 6.980549252 7.276250951 7.334075666 7.075827409 7.140735654 7.893301453 7.905591554 7.547857972 7.642715803 7.340046002 7.644611231 7.320110916 7.560461006 7.313450623 7.567343087 7.402792109 7.329568605
1729_at 6.853927378 6.637271252 7.032554149 7.222697397 6.946773909 7.08583923 6.747297193 7.061786827 6.756255399 6.859982089 7.439588114 7.051704042 6.951460349 7.27016818 6.835502631 6.716971435 6.972479171 6.903842457 6.704160834 6.759558493 6.879515922 6.973107526 6.787709507 7.098072989 6.502170072 7.151695336 7.05298453 6.845078921 7.041017425 6.636554198 6.916113531 7.124554094 6.908628135 7.238375269 6.984103767 7.021443104 6.7525288 6.646182867 6.899391825 6.768701237 6.794496871 6.645088957 7.07915325 7.245319484 7.264400672 6.402856072 6.588288955 7.076507186 6.738176964 6.852010928 6.738073273 7.120225693 7.18725884 7.49132878 7.498643908 6.928127635 7.010329027 6.84632003 7.202643975 6.679016356 6.967916054 6.962956114 7.140975148
177_at 4.12159202 4.007553875 4.174323077 4.189424174 3.894813391 3.967230957 3.942179095 3.996312191 4.380705654 3.990784949 4.126745559 4.132034126 4.360421131 4.021938945 4.056516055 4.438378205 4.211793493 4.149543599 4.078266002 4.077909295 4.12639561 4.237465865 4.133145592 4.120673178 4.15712489 4.027626596 4.049439709 4.234156614 4.026523781 4.119724757 3.995371551 4.21337696 4.127175967 4.274873127 4.178280784 4.298372779 3.953266759 4.157387891 4.395912848 4.144598043 4.118585706 3.946996679 3.88002348 4.154133344 4.065406973 3.920942294 4.004730111 3.882475403 4.12742972 4.194891768 4.135166718 4.25950145 4.195521136 4.107193302 4.177212308 4.090995581 4.24755611 3.933897777 4.19994808 4.081171529 4.042672485 4.030386682 4.107384456
1773_at 6.388623691 5.723918483 5.91271918 6.348933784 6.101543762 6.390562379 6.121688885 6.221664655 6.152011679 5.758268053 6.142072204 6.00635324 6.44191767 6.164154414 5.938929336 6.329240076 6.201385357 6.139764516 6.392825349 6.526764285 5.947180628 6.29097782 6.217646924 6.603791572 5.328704405 5.312841862 6.579603312 6.427459562 6.303747514 6.181442246 6.334337388 6.847997632 6.127504559 6.989687905 6.082850652 6.194379179 5.739299975 6.446605487 6.777192457 6.703011036 6.005791227 5.595180463 5.816769022 8.102508856 5.879619653 5.781904046 6.134428374 6.190903654 6.074013475 6.472385669 6.023935508 5.973247684 6.466838362 6.296902064 5.951273211 6.413251039 5.848031901 5.53134763 5.797077291 6.052449035 5.550120179 5.649442869 5.554971329

Total number of rows: 22285

Table truncated, full table size 16537 Kbytes.




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