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Series GSE263399 Query DataSets for GSE263399
Status Public on Apr 26, 2024
Title Natural killer cell receptor expressing B cells: a distinct but rare subset of innate immune cells in rhesus macaques
Organism Macaca mulatta
Experiment type Expression profiling by high throughput sequencing
Summary Natural killer-like B (NKB) cells are unique innate immune cells that express both natural killer (NK) and B cell markers. They act as first responders by secreting IL-18 upon infection, thus inducing the critical cascade of innate and adaptive immune cell infiltration and activation. However, limited research exists on the role of NKB cells in homeostasis, and infection in primates. Therefore, we investigated the signaling and trafficking proteome, in situ localization and transcriptome of NKB cells in comparison to conventionally defined NK and B cells. Intracellular signaling proteins and trafficking markers were expressed differentially on naïve NKB characterized by high expression of CD62L and Syk, and low expression of CD69, a4b7, FcRg, Zap70, and CD3z which were more similar to B cells than NK cells. CD20+NKG2a/c+ NKB cells were identified in spleen, mesenteric lymph nodes (MLN), colon, jejunum, and liver of naïve RM by tissue imaging with NKB cell counts concentrated in spleen and MLN. Transcriptomic analysis of naïve splenic NKB cells by scRNAseq showed that NKB cells undergo somatic hypermutation and express Ig receptors, similar to B cells. While only 15% of sorted NKB population showed transcript expression of both KLRC1 (NKG2A) and MS4A1 (CD20), cells expressing KLRC1, MS4A1and IgH/IgL transcripts were only 5%. However, we observed expanded NKB frequencies in gut mucosa as early as 35 days and in buccal mucosa as early as 14 days post-SIV infection using an RM model of HIV infection, thus indicating NKB cells, though infrequent, could have potential roles to play in mucosal infections.
 
Overall design Sorted NK, B and NK cells from three SIV-negative rhesus macaques
 
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Submission date Apr 08, 2024
Last update date Apr 26, 2024
Contact name Gregory K Tharp
E-mail(s) gktharp@emory.edu
Phone 404-727-7797
Organization name Yerkes National Primate Research Center
Department Developmental and Cognitive Neuroscience
Lab Genomics Core
Street address 954 Gatewood Dr
City Atlanta
State/province GA
ZIP/Postal code 30329-4208
Country USA
 
Platforms (1)
GPL27943 Illumina NovaSeq 6000 (Macaca mulatta)
Samples (314)
GSM8190849 94-09 Plate0 NK A2
GSM8190850 94-09 Plate0 NK A3
GSM8190851 94-09 Plate0 NK A4
Relations
BioProject PRJNA1097473

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE263399_ReadCounts.txt.gz 2.0 Mb (ftp)(http) TXT
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Raw data are available in SRA

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