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Series GSE263259 Query DataSets for GSE263259
Status Public on May 02, 2024
Title Releasing the mitochondrial respiration brake MCJ/DnaJC15 enhances CD8 CAR-T cell therapy efficacy
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Metabolism of chimeric antigen receptor (CAR) T cells is emerging as an important area to improve CAR-T cell therapy in cancer treatment. Mitochondrial respiration is essential for survival and function of CAR-T cells, but developing strategies to specifically enhance mitochondrial respiration has been challenging. Here we identify MCJ/DnaJC15, an endogenous negative regulator of mitochondrial Complex I, as a metabolic target to enhance mitochondrial respiration in CD8 CAR-T cells. Loss of MCJ in CD8 CAR-T cells increases their in vitro and in vivo efficacy against mouse B cell leukemias. MCJ deficiency in TCR- specific CD8 cells also increases their efficacy against solid tumors in vivo. Furthermore, we reveal that human CD8 cells express MCJ and that silencing MCJ expression increases mitochondrial metabolism and anti-tumor activity of human CAR-T cells. Thus, we demonstrate the unique therapeutic potential of targeting MCJ to enhance the metabolism and efficacy of adoptive T cell therapies.
 
Overall design MCJ/DnaJC15 is an endogenous negative regulator of Complex I and mitochondrial respiration. The goal of these RNAseq experiments is to characterize the phenotype of mouse WT CD8 CAR-T cells and MCJ KO CD8 CAR-T cells after three expansions with IL-2
 
Contributor(s) Wu M, Valenca-Pereira F, Cendali F, Giddings EL, Pham-Danis C, Yarnell MC, Novak AJ, Henao-Mejia J, Flavell RA, D’Alessandro A, Kohler ME, Rincon M, Thompson SB, Brunetti TM
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Submission date Apr 04, 2024
Last update date May 02, 2024
Contact name Tonya Brunetti
E-mail(s) tonya.brunetti@cuanschutz.edu
Organization name University of Colorado Anschutz Medical Campus
Department Immunology and Microbiology
Street address 12800 East 19th Avenue
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM8188740 MCJ KO, rep1
GSM8188741 MCJ KO, rep2
GSM8188742 MCJ KO, rep3
Relations
BioProject PRJNA1096360

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Supplementary file Size Download File type/resource
GSE263259_MCJ_KO_vs_WT_results_deseq2_regress_surrogate_RUV_K2_vars.csv.gz 955.0 Kb (ftp)(http) CSV
GSE263259_counts_matrix.rds.gz 338.3 Kb (ftp)(http) RDS
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