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| Status |
Public on Dec 17, 2023 |
| Title |
Single-cell immunophenotyping revealed the association of CD4+ central and CD4+ effector memory T cells linking exacerbating chronic obstructive pulmonary disease and NSCLC |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Introduction: Tobacco smoking generates airway inflammation in chronic obstructive pulmonary disease (COPD), and its involvement in the development of lung cancer is still among the leading causes of early death. Therefore, we aimed to have a better understanding of the disbalance in immunoregulation in chronic inflammatory conditions in smoker subjects with stable COPD (stCOPD), exacerbating COPD (exCOPD), or non-small cell lung cancer (NSCLC). Methods: Smoker controls without chronic illness were recruited as controls. Through extensive mapping of single cells, surface receptor quantification was achieved by single-cell mass cytometry (CyTOF) with 29 antibodies. The CyTOF characterized 14 main immune subsets such as CD4+, CD8+, CD4+/CD8+, CD4 −/CD8−, and g/d T cells and other subsets such as CD4+ or CD8+ NKT cells, NK cells, B cells, plasmablasts, monocytes, CD11cdim, mDCs, and pDCs. The CD4+ central memory (CM) T cells (CD4+/CD45RA−/CD45RO+/CD197+) and CD4+ effector memory (EM) T cells (CD4+/CD45RA−/CD45RO+/CD197−) were FACSsorted for RNA-Seq analysis. Plasma samples were assayed by Luminex MAGPIX® for the quantitative measurement of 17 soluble immuno-oncology mediators (BTLA, CD28, CD80, CD27, CD40, CD86, CTLA-4, GITR, GITRL, HVEM, ICOS, LAG-3, PD-1, PD-L1, PD-L2, TIM-3, TLR-2) in the four studied groups. Results: Our focus was on T-cell-dependent differences in COPD and NSCLC, where peripheral CD4+ central memory and CD4+ effector memory cells showed a significant reduction in exCOPD and CD4+ CM showed elevation in NSCLC. The transcriptome analysis delineated a perfect correlation of differentially expressed genes between exacerbating COPD and NSCLCderived peripheral CD4+ CM or CD4+ EM cells. The measurement of 17 immuno-oncology soluble mediators revealed a disease-associated phenotype in the peripheral blood of stCOPD, exCOPD, and NSCLC patients. Discussion: The applied single-cell mass cytometry, the whole transcriptome profiling of peripheral CD4+ memory cells, and the quantification of 17 plasma mediators provided complex data that may contribute to the understanding of the disbalance in immune homeostasis generated or sustained by tobacco smoking in COPD and NSCLC.
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| Overall design |
FACS sorted CD4+ human central memory and effector memory T-cells: 1. CD4+ CM T-cell contol, 2. CD4+ CM T-cell stable COPD, 3. CD4+ CM T-cell COPD with exacerbation, 4. CD4+ CM T-cell NSCLC, 5. CD4+ EM T-cell contol, 6. CD4+ EM T-cell stable COPD, 7. CD4+ EM T-cell COPD with exacerbation, 8. CD4+ EM T-cell NSCLC
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| Web link |
https://pubmed.ncbi.nlm.nih.gov/38187374/
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| Contributor(s) |
Gémes N, Zvara Á, Puskás LG, Czimmerer Z, Manczinger M, Balogh GM, Szebeni GJ |
| Citation(s) |
38187374 |
| Submission date |
Dec 14, 2023 |
| Last update date |
Mar 18, 2024 |
| Contact name |
Gabor Janos Dr. Szebeni |
| E-mail(s) |
szebeni.gabor@brc.hu
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| Phone |
+36 303261762
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| Organization name |
Biological Research Centre
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| Street address |
Temesvári krt. 62.
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| City |
Szeged |
| State/province |
Csongrád |
| ZIP/Postal code |
6726 |
| Country |
Hungary |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA1052744 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE250254_Processed_RNAseq.xlsx |
120.5 Kb |
(ftp)(http) |
XLSX |
| GSE250254_Processed_data_all_reads.xls.gz |
2.3 Mb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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