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GEO accession:
Series GSE236900
Query DataSets for GSE236900
Status
Public on Jan 16, 2024
Title
Nucleolar detention of NONO shields DNA double-strand breaks from aberrant transcripts
Organism
Homo sapiens
Experiment type
Other
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://doi.org/10.1093/nar/gkae022
Citation(s)
38224452
Submission date
Jul 10, 2023
Last update date
Jan 17, 2024
Contact name
Martin Eilers
Organization name
University of Wuerzburg
Department
Chair for Biochemistry and Molecular Biology
Lab
Martin Eilers
Street address
Am Hubland
City
Wuerzburg
ZIP/Postal code
97074
Country
Germany
Platforms (1)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (63)
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More...
GSM7578609
4sU_shCtrl_NoEto rep1
GSM7578610
4sU_shCtrl_Eto rep1
GSM7578611
4sU_shNONO_NoEto rep1
GSM7578612
4sU_shNONO_Eto rep1
GSM7578613
4sU_shCtrl_Eto rep2
GSM7578614
4sU_shNONO_NoEto rep2
GSM7578615
4sU_shNONO_Eto rep2
GSM7578616
4sU_shCtrl_NoEto rep3
GSM7578617
4sU_shCtrl_Eto rep3
GSM7578618
4sU_shNONO_NoEto rep3
GSM7578619
4sU_shNONO_Eto rep3
GSM7578626
APEX2-seq shCtrl_UL rep1
GSM7578627
APEX2-seq shCtrl_UL rep2
GSM7578628
APEX2-seq shCtrl_NoEto rep1
GSM7578629
APEX2-seq shCtrl_NoEto rep2
GSM7578630
APEX2-seq shCtrl_NoEto rep3
GSM7578631
APEX2-seq shCtrl_Eto rep1
GSM7578632
APEX2-seq shCtrl_Eto rep2
GSM7578633
APEX2-seq shCtrl_Eto rep3
GSM7578634
APEX2-seq shNONO_NoEto rep1
GSM7578635
APEX2-seq shNONO_NoEto rep2
GSM7578636
APEX2-seq shNONO_NoEto rep3
GSM7578637
APEX2-seq shNONO_Eto rep1
GSM7578638
APEX2-seq shNONO_Eto rep2
GSM7578647
BLISS siNTC rep1
GSM7578648
BLISS siNTC Etoposide rep1
GSM7578649
BLISS siNONO rep1
GSM7578650
BLISS siNONO Etoposide rep1
GSM7578651
BLISS siNTC rep2
GSM7578652
BLISS siNTC Etoposide rep2
GSM7578653
BLISS siNONO rep2
GSM7578654
BLISS siNONO Etoposide rep2
GSM7578655
BLISS siNTC rep3
GSM7578656
BLISS siNTC Etoposide rep3
GSM7578657
BLISS siNONO rep3
GSM7578658
BLISS siNONO Etoposide rep3
GSM7578671
mNETseq_IP_Ctrl
GSM7578672
mNETseq_IP_Eto
GSM7578673
mNETseq_Input_Ctrl
GSM7578674
mNETseq_Input_Eto
GSM7585033
IgG_control_all
GSM7585034
H2BK120ac Cut&Run H3K4me3 control with mCherryNONO rescue
GSM7585035
H2BK120ac Cut&Run shCtrl_NoEto with mCherryNONO rescue
GSM7585036
H2BK120ac Cut&Run shCtrl_Eto with mCherryNONO rescue
GSM7585037
H2BK120ac Cut&Run shNONO_NoEto with mCherryNONO rescue
GSM7585038
H2BK120ac Cut&Run shNONO_Eto with mCherryNONO rescue
GSM7585039
H2BK120ac Cut&Run H3K4me3 control
GSM7585040
H2BK120ac Cut&Run shCtrl_NoEto
GSM7585041
H2BK120ac Cut&Run shCtrl_Eto
GSM7585042
H2BK120ac Cut&Run shNONO_NoEto
GSM7585043
H2BK120ac Cut&Run shNONO_Eto
GSM7585044
V5-RnaseH1-D210N_Cut&Run H3K4me3 control
GSM7585045
V5-RnaseH1-D210N_Cut&Run siCtrl
GSM7585046
V5-RnaseH1-D210N_Cut&Run siNONO
GSM7585047
V5-RnaseH1-D210N_Cut&Run siCtrl_Eto
GSM7585048
V5-RnaseH1-D210N_Cut&Run siNONO_Eto
GSM7585049
V5-RnaseH1-WT_Cut&Run siCtrl_Eto
GSM7585050
V5-RnaseH1-WT_Cut&Run siNONO_Eto
GSM7585051
NONO Cut&Run H3K4me3 control
GSM7585052
NONO Cut&Run shCtrl_NoEto
GSM7585053
NONO Cut&Run shCtrl_Eto
GSM7585054
NONO Cut&Run shNONO_NoEto
GSM7585055
NONO Cut&Run shNONO_Eto
This SuperSeries is composed of the following SubSeries:
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GSE236882
Nucleolar detention of NONO shields DNA double-strand breaks from aberrant transcripts [4sU-seq]
GSE236884
Nucleolar detention of NONO shields DNA double-strand breaks from aberrant transcripts [APEX2-seq]
GSE236886
Nucleolar detention of NONO shields DNA double-strand breaks from aberrant transcripts [BLISS]
GSE236888
Nucleolar detention of NONO shields DNA double-strand breaks from aberrant transcripts [mNET]
GSE236899
Nucleolar detention of NONO shields DNA double-strand breaks from aberrant transcripts [CUT&RUN]
Relations
BioProject
PRJNA993013
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE236900_RAW.tar
2.2 Gb
(http)
(custom)
TAR (of BEDGRAPH)
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