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Series GSE232010 Query DataSets for GSE232010
Status Public on May 16, 2024
Title ATP-citrate lyase regulates chromatin-dependent activation and maintenance of the myofibroblast gene program and cardiac fibrosis
Organism Mus musculus
Experiment type Other
Summary Differentiation of cardiac fibroblasts (CFs) to myofibroblasts is necessary for matrix remodeling and fibrosis in heart failure. We previously reported mitochondrial calcium signaling drives α-ketoglutarate-dependent histone demethylation, promoting the myofibroblast gene program. Here, we investigated the role of ATP-citrate lyase (ACLY), a key enzyme for acetyl-CoA biosynthesis, in histone acetylation regulating myofibroblast formation and persistence in cardiac fibrosis. Inactivation of ACLY prevented, and importantly reversed, myofibroblasts towards quiescence. Genetic deletion of Acly in activated myofibroblasts prevented fibrosis and preserved cardiac function in murine pressure-overload. TGFβ stimulation enhanced ACLY nuclear localization and increased H3K27ac at fibrotic gene loci. Pharmacological inhibition of ACLY or forced nuclear expression of dominant-negative ACLY mutant prevented myofibroblast formation and H3K27ac. Our data indicate nuclear ACLY activity is necessary for myofibroblast differentiation and persistence by maintaining histone acetylation at TGFβ-induced myofibroblast genes. These findings provide novel clinical rational to prevent and reverse pathological fibrosis.
CUT&RUN Sequencing for H3K27ac on the role of ACLY in myofibroblast differentiaton.
 
Overall design H3K27ac-enriched DNA using CUT&RUN from cardiac fiborblasts stimulated with or without TGFβ and treated with and without ACLY inhibitor.
 
Contributor(s) Lazaropoulos MP, Gibb AA, Chapski DJ, Vondriska TM, Elrod JW
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NIH grant(s)
Grant ID Grant title Affiliation Name
F30 HL152564 The Role of Acetyl-CoA Metabolism in Epigenetic Regulation of Myofibroblast Differentiation TEMPLE UNIVERSITY Michael Lazaropoulos
Submission date May 08, 2023
Last update date May 17, 2024
Contact name Michael Panagiotis Lazaropoulos
E-mail(s) michael.laz@temple.edu, lazaropoulosm@gmail.com
Phone +16099691328
Organization name Temple University
Department Department of Cardiovascular Sciences
Lab Elrod Lab
Street address 3500 North Broad Street
City Philadelphia
State/province PA
ZIP/Postal code 19140
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (15)
GSM7310316 ctrl_A1
GSM7310317 ctrl_B2
GSM7310318 ctrl_C3
Relations
BioProject PRJNA970472

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232010_RAW.tar 799.5 Mb (http)(custom) TAR (of BW)
GSE232010_more_occupied_then_less_99_regions.bed.gz 1.5 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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