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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 28, 2023 |
| Title |
Chromatin Conformation Capture in gg8tTAtetOP2 Olfactory Sensory Neurons |
| Organism |
Mus musculus |
| Experiment type |
Other
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| Summary |
We performed HiC, Liquid HiC, and H3K27ac HiChIP in gg8tTA; tetOP2 OSNs sorted from the mouse main olfactory epithelium (MOE).
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| Overall design |
All samples are GFP+ cells from gg8tTA>tetOP2iGFP mouse MOE and were processed for HiC, Liquid Hi-C, or H3K27ac HiChIP.
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| Web link |
https://pubmed.ncbi.nlm.nih.gov/38123679/
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| Contributor(s) |
Pourmorady A, Lomvardas S |
| Citation(s) |
38123679 |
| Submission date |
Apr 21, 2023 |
| Last update date |
Dec 28, 2023 |
| Contact name |
Ariel Pourmorady |
| E-mail(s) |
adp2164@columbia.edu, arielpourmorady@gmail.com
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| Organization name |
Columbia University
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| Department |
Neurobiology and Behavior
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| Lab |
Lomvardas Lab
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| Street address |
3227 Broadway
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10027 |
| Country |
USA |
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| Platforms (2) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL30172 |
NextSeq 2000 (Mus musculus) |
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| Samples (14)
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| GSM7213972 |
gg8tTAtetOP2, 5-min Pre-Digestion, r1 |
| GSM7213973 |
gg8tTAtetOP2, 5-min Pre-Digestion, r2 |
| GSM7213974 |
gg8tTAtetOP2, 5-min Pre-Digestion, r3 |
| GSM7213975 |
gg8tTAtetOP2, 30-min Pre-Digestion, r1 |
| GSM7213976 |
gg8tTAtetOP2, 30-min Pre-Digestion, r2 |
| GSM7213977 |
gg8tTAtetOP2, 30-min Pre-Digestion, r3 |
| GSM7213978 |
gg8tTAtetOP2, 60-min Pre-Digestion, r1 |
| GSM7213979 |
gg8tTAtetOP2, 60-min Pre-Digestion, r2 |
| GSM7213980 |
gg8tTAtetOP2, 60-min Pre-Digestion, r3 |
| GSM7213981 |
gg8tTAtetOP2, H3K27ac HiChIP, r1 |
| GSM7213982 |
gg8tTAtetOP2, H3K27ac HiChIP, r2 |
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| This SubSeries is part of SuperSeries: |
| GSE230380 |
Olfactory receptor mRNAs act as selfish non-coding RNAs that enforce transcriptional singularity |
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| Relations |
| BioProject |
PRJNA960627 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE230332_RAW.tar |
3.3 Gb |
(http)(custom) |
TAR (of TXT) |
| GSE230332_cis.gg8tTA.tetOP2.het.control.30minPreDig.Liquid.HiC.210807.merge.50000.txt.gz |
106.2 Mb |
(ftp)(http) |
TXT |
| GSE230332_cis.gg8tTA.tetOP2.het.control.5minPreDig.LiquidHiC.merge.50000.txt.gz |
129.6 Mb |
(ftp)(http) |
TXT |
| GSE230332_cis.gg8tTA.tetOP2.het.control.60minPreDig.Liquid.HiC.210807.merge.50000.txt.gz |
121.1 Mb |
(ftp)(http) |
TXT |
| GSE230332_cis.gg8tTA.tetOP2.het.control.ImmediateFix.LiquidHiC.merge.50000.txt.gz |
134.1 Mb |
(ftp)(http) |
TXT |
| GSE230332_cis.gg8tTAtetOP2.H3K27ac.HiChIP.AP151.AP152_230921.50000.txt.gz |
60.3 Mb |
(ftp)(http) |
TXT |
| GSE230332_trans.gg8tTA.tetOP2.het.control.30minPreDig.Liquid.HiC.210807.merge.50000.txt.gz |
494.1 Mb |
(ftp)(http) |
TXT |
| GSE230332_trans.gg8tTA.tetOP2.het.control.5minPreDig.LiquidHiC.merge.50000.txt.gz |
612.3 Mb |
(ftp)(http) |
TXT |
| GSE230332_trans.gg8tTA.tetOP2.het.control.60minPreDig.Liquid.HiC.210807.merge.50000.txt.gz |
607.3 Mb |
(ftp)(http) |
TXT |
| GSE230332_trans.gg8tTA.tetOP2.het.control.ImmediateFix.LiquidHiC.merge.50000.txt.gz |
684.2 Mb |
(ftp)(http) |
TXT |
| GSE230332_trans.gg8tTAtetOP2.H3K27ac.HiChIP.AP151.AP152_230921.50000.txt.gz |
214.8 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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