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Series GSE222575 Query DataSets for GSE222575
Status Public on May 08, 2024
Title Responders to immune checkpoint therapy display early clonal expansion of tumour-infiltrating lymphocytes
Organism Mus musculus
Experiment type Other
Summary Using murine models that exclude variation in host genetics, environmental factors and tumour mutation burden, limiting variation between animals to naturally diverse TCRβ repertoires, we applied bulk TCRseq to study TCRβ repertoire dynamics in ICT responders and non-responders
 
Overall design Bulk TCRβseq of tumor infiltrating lymphocytes at different timepoints prior to and during anti-CTLA-4 and anti-PD-L1 treatment, responders and non-responders. Each sample represents an individual biological replicate (i.e. no duplicate samples from the same mouse).
 
Contributor(s) Kidman J, Chee J
Citation(s) 38686178
Submission date Jan 10, 2023
Last update date May 09, 2024
Contact name Jonathan Chee
E-mail(s) jonathan.chee@uwa.edu.au
Organization name University of Western Australia
Street address M503, 35 Stirling Highway
City Crawley
State/province WA
ZIP/Postal code 6009
Country Australia
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (225)
GSM6926657 JK4_1_2_0_LT_4
GSM6926658 JK4_1_2_0_LT_8
GSM6926659 JK4_1_2_0_RT_4
Relations
BioProject PRJNA922553

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE222575_RAW.tar 123.9 Mb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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