|
| Status |
Public on Aug 01, 2023 |
| Title |
TF binding profiles acquired using ChEC-seq in various TF co-deletion strains |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
|
| Summary |
This data set contains ChEC-seq binding profiles of various TF in yeast strains deleted of other TFs. Each sample has a pair-end sequencing file and a processed file (.out) is a genomic signal track after alignment to S.cerevisiae (R64) reference genome. Mapping was done using the read end.
This dataset also contains raw and processed MNase-seq data files for nucleosome occupancy.
Data related to manuscript: The architecture of binding cooperativity between densely bound transcription factors.
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| |
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| Overall design |
Binding of 28 TFs in co-deletion of multiple closely-bound TFs, nucleosome profiles of selected strains
|
| Web link |
https://doi.org/10.1016/j.cels.2023.06.010
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| |
|
| Contributor(s) |
Lupo O, Kumar D, Livne R, Chappleboim M, Levy I, Barkai N |
| Citation(s) |
37527656 |
| Submission date |
Jan 05, 2023 |
| Last update date |
Oct 31, 2023 |
| Contact name |
Naama Barkai |
| E-mail(s) |
naama.barkai@weizmann.ac.il
|
| Phone |
+972897912734
|
| Organization name |
Weizmann Institute of Science
|
| Department |
Molecular Genetics
|
| Lab |
Barkai Lab
|
| Street address |
Herzl 234
|
| City |
Rehovot |
| ZIP/Postal code |
7610001 |
| Country |
Israel |
| |
|
| Platforms (1) |
| GPL27812 |
Illumina NovaSeq 6000 (Saccharomyces cerevisiae) |
|
| Samples (479)
|
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| Relations |
| BioProject |
PRJNA918717 |
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