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| Status |
Public on May 16, 2024 |
| Title |
Transcription factor shapes chromosomal conformation and regulates gene expression in bacterial adaptation |
| Organism |
Zymomonas mobilis |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38716861 |
| Submission date |
Dec 21, 2022 |
| Last update date |
May 17, 2024 |
| Contact name |
Mao Chen |
| E-mail(s) |
chenmao92@hotmail.com
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| Organization name |
Biogas Institute of Ministry of Agriculture and Rural Affairs
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| Street address |
Section 4-13, Renmin Rd. South
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| City |
Chengdu |
| ZIP/Postal code |
610041 |
| Country |
China |
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| Platforms (1) |
| GPL32966 |
HiSeq X Ten (Zymomonas mobilis) |
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| Samples (35)
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| GSM6876591 |
ZM532, RM, Zur, rep2 |
| GSM6876592 |
ZM532, RM, INPUT |
| GSM6876593 |
ZM4, RM, rep1 |
| GSM6876594 |
ZM4, RM, rep2 |
| GSM6876595 |
ZM532, RM, rep1 |
| GSM6876596 |
ZM532, RM, rep2 |
| GSM6876597 |
ZM532, AF, rep1 |
| GSM6876598 |
ZM532, AF, rep2 |
| GSM6876599 |
zur, RM, rep1 |
| GSM6876600 |
zur, RM, rep2 |
| GSM6876601 |
zurfur, RM, rep1 |
| GSM6876602 |
zurfur, RM, rep2 |
| GSM6876603 |
ZM4, RM, rna-seq, rep1 |
| GSM6876604 |
ZM4, RM, rna-seq, rep2 |
| GSM6876605 |
ZM4, RM, rna-seq, rep3 |
| GSM6876606 |
ZM532, RM, rna-seq, rep1 |
| GSM6876607 |
ZM532, RM, rna-seq, rep2 |
| GSM6876608 |
ZM532, RM, rna-seq, rep3 |
| GSM6876609 |
ZM532, AF, rna-seq, rep1 |
| GSM6876610 |
ZM532, AF, rna-seq, rep2 |
| GSM6876611 |
ZM532, AF, rna-seq, rep3 |
| GSM6876612 |
zur, KO, RM, rna-seq, rep1 |
| GSM6876613 |
zur, KO, RM, rna-seq, rep2 |
| GSM6876614 |
zur, KO, RM, rna-seq, rep3 |
| GSM6876615 |
zurfur, KO, RM, rna-seq, rep1 |
| GSM6876616 |
zurfur, KO, RM, rna-seq, rep2 |
| GSM6876617 |
zurfur, KO, RM, rna-seq, rep3 |
| GSM7977993 |
ZM532, AF, Fur, rep1 |
| GSM7977994 |
ZM532, AF, Fur, rep2 |
| GSM7977995 |
ZM532, AF, Zur, rep1 |
| GSM7977996 |
ZM532, AF, Zur, rep2 |
| GSM7977997 |
ZM532, AF, INPUT |
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| This SuperSeries is composed of the following SubSeries: |
| GSE221496 |
Transcription factor shapes chromosomal conformation and regulates gene expression in bacterial adaptation [ChIP-Seq] |
| GSE221497 |
Transcription factor shapes chromosomal conformation and regulates gene expression in bacterial adaptation [Hi-C] |
| GSE221498 |
Transcription factor shapes chromosomal conformation and regulates gene expression in bacterial adaptation [RNA-Seq] |
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| Relations |
| BioProject |
PRJNA914680 |
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