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| Status |
Public on Apr 15, 2024 |
| Title |
Comparative Transcriptome Analysis of Two Rice Genotypes with Varying Tolerance to Salt Stress |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The goals of this study were to compare the transcriptome of two rice genotypes under salt stress by RNA-Seq.
We performed differential gene expression analysis by comparing samples of same genotypes in control and stress conditions and different genotypes in the same condition.
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| Overall design |
Gene expression profiling by high throughput sequencing.
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| Contributor(s) |
Ramzan MK, Zahra N, Zaid I |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Aug 10, 2022 |
| Last update date |
Apr 15, 2024 |
| Contact name |
Muhammad Ramzan Khan |
| E-mail(s) |
mrkhan@parc.gov.pk
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| Phone |
+92-332-5394396
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| Organization name |
National Agricultural Research Centre
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| Department |
National Institute Of Genomics And Advanced Bio-Technology (NIGAB)
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| Lab |
Bioinformatics Lab
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| Street address |
Park Rd
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| City |
Islamabad |
| ZIP/Postal code |
45500 |
| Country |
Pakistan |
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| Platforms (1) |
| GPL27660 |
Illumina NovaSeq 6000 (Oryza sativa) |
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| Samples (10)
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| GSM6443277 |
S13Yan-2, 140mM, Root, Rep 2 |
| GSM6443278 |
S13Yan-3, 140mM, Root, Rep 3 |
| GSM6443279 |
S3-1, 0mM, Root, Rep 1 |
| GSM6443280 |
S3-2, 0mM, Root, Rep 2 |
| GSM6443281 |
S3Yan-1, 140mM, Root, Rep 1 |
| GSM6443282 |
S3Yan-2, 140mM, Root, Rep 2 |
| GSM6443283 |
S3Yan-3, 140mM, Root, Rep 3 |
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| Relations |
| BioProject |
PRJNA868365 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE210952_RAW.tar |
16.7 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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