|
| Status |
Public on Oct 31, 2022 |
| Title |
Profiling of H3K27ac positioning in primary erythroid cells by CUT&RUN |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
For identifying the specific expressed genes in PDAC, we constructed sequencing libraries from polyadenylated-RNA extracted from 6 PDAC specimens and 6 non-tumor adjacent tissues.
|
| |
|
| Overall design |
This series contains CUT&RUN datasets for H3K27ac in FACS sorted primary erythroid cells. There are multiple biological replicates for each progenitor population, plus IgG control datasets.
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| |
|
| Contributor(s) |
Beagrie RA, Tesloianu R, Higgs DR |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Apr 02, 2021 |
| Last update date |
Nov 02, 2022 |
| Contact name |
Robert A Beagrie |
| E-mail(s) |
robert.beagrie@ndcls.ox.ac.uk
|
| Organization name |
MRC Weatherall Institute of Molecular Medicine
|
| Department |
Molecular Haematology Unit
|
| Street address |
Headley Way
|
| City |
Oxford |
| ZIP/Postal code |
OX39DS |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
|
| Samples (12)
|
| GSM5224744 |
RB-CR115_Lin+ - H3K27ac CUT&RUN replicate 1 |
| GSM5224745 |
RB-CR165_Lin+ - H3K27ac CUT&RUN replicate 2 |
| GSM5224746 |
RB-CR116_S0 CD71 low - H3K27ac CUT&RUN replicate 1 |
| GSM5224747 |
RB-CR166_S0 CD71 low - H3K27ac CUT&RUN replicate 2 |
| GSM5224748 |
RB-CR117_S0 CD71 medium - H3K27ac CUT&RUN replicate 1 |
| GSM5224749 |
RB-CR167_S0 CD71 medium - H3K27ac CUT&RUN replicate 2 |
| GSM5224750 |
RB-CR118_S1 - H3K27ac CUT&RUN replicate 1 |
| GSM5224751 |
RB-CR168_S1 - H3K27ac CUT&RUN replicate 2 |
| GSM5224752 |
RB-CR119_S2 - H3K27ac CUT&RUN replicate 1 |
| GSM5224753 |
RB-CR120_S3 - H3K27ac CUT&RUN replicate 1 |
| GSM5224754 |
RB-CR122_S3 - IgG CUT&RUN replicate 1 |
| GSM5224755 |
RB-CR121_S4 - H3K27ac CUT&RUN replicate 1 |
|
| Relations |
| BioProject |
PRJNA719370 |
| SRA |
SRP313239 |
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