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Series GSE171116 Query DataSets for GSE171116
Status Public on Nov 21, 2022
Title ChIP-seq of METTL4-mediated Nuclear N6-Deoxyadenosine Methylation Promotes Metastasis through Activating Multiple Metastasis-inducing targets
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Understanding the epigenome profiling of 6mA modification by METTL4, and HIF1 binding sites under hypoxia.
 
Overall design Most of samples are 3 replicates. For IgG-ChIP-exo, HIF1 ChIP-seq only once.
 
Contributor(s) Hsu K, Lai JC, He C, Wu K
Citation(s) 36461076
Submission date Mar 30, 2021
Last update date Dec 15, 2022
Contact name Kou-Juey Wu
E-mail(s) wukj@cgmh.org.tw
Organization name Chang Gung Memorial hospital at Linkou
Department Cancer Genome Research Center
Street address No.15, Wenhua 1st Road, Gueishan Dist
City Taoyuang
State/province Taiwan
ZIP/Postal code 333
Country Taiwan
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (21)
GSM5224562 FADU_normoxia_rep1_N6mA_ChIPexo
GSM5224563 FADU_normoxia_rep2_N6mA_ChIPexo
GSM5224564 FADU_normoxia_rep3_N6mA_ChIPexo
Relations
BioProject PRJNA719298
SRA SRP313210

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE171116_N6mA_differential_compare1.txt.gz 53.5 Mb (ftp)(http) TXT
GSE171116_N6mA_differential_compare2.txt.gz 58.5 Mb (ftp)(http) TXT
GSE171116_RAW.tar 965.6 Mb (http)(custom) TAR (of BED, BIGWIG, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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