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Series GSE163799 Query DataSets for GSE163799
Status Public on Dec 24, 2020
Title Evaluation of chromosomal abnormalities and copy number variations in fetuses with ultrasonic soft markers
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary This study aimed to evaluate the clinical value of copy number variations (CNVs) in fetuses with ultrasonic soft markers. Among 1131 fetuses, 729 had single ultrasonic soft marker, 322 had two ultrasonic soft markers, and 80 had three or more ultrasonic soft markers. All fetuses underwent single nucleotide polymorphism (SNP) array analysis. Among 1131 fetuses with ultrasonic soft markers, 46 had chromosomal abnormalities. In addition to the 46 fetuses with chromosomal abnormalities consistent with the results of the karyotyping analysis, the SNP array identified additional 6.1% (69/1131) abnormal CNVs. No significant difference was found in the rate of abnormal CNVs among the groups. The SNP array can fully complement conventional karyotyping in fetuses with ultrasonic soft markers, improve detection rate of chromosomal abnormalities, and affect pregnancy outcomes.
 
Overall design 1131 fetuses underwent single nucleotide polymorphism (SNP) array analysis, and the SNP array identified 6.1% (69/1131) abnormal CNVs.
 
Contributor(s) Cai M, Huang H
Citation(s) 32858251, 34285689
Submission date Dec 23, 2020
Last update date Jul 28, 2021
Contact name Hailong Huang
Organization name Fujian Maternity and Child Health Hospital
Street address No.18 Daoshan Road, Gulou District
City Fuzhou
State/province Fujian
ZIP/Postal code 350001
Country China
 
Platforms (1)
GPL18637 [CytoScan750K_Array] Affymetrix CytoScan 750K Array
Samples (23)
GSM4987616 cord blood sampling 3
GSM4987617 cord blood sampling 4
GSM4987618 amniotic fluid fetal cells 7
Relations
BioProject PRJNA687566

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163799_RAW.tar 1.1 Gb (http)(custom) TAR (of CEL, CYCHP)
Processed data included within Sample table
Processed data provided as supplementary file

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