 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 18, 2023 |
| Title |
The piRNAs bounding to Piwil2 in the CA1 region of the transient Global Cerebral Ischemia rats hippocampus |
| Organism |
Rattus norvegicus |
| Experiment type |
Other
|
| Summary |
Purpose：To identify piRNAs bound to Piwil2 in Sham,transient Global Cerebral Ischemia(tGCI) and transient Global Cerebral Ischemia(tGCI) with Hypoxic Postconditioning (HPC).
Methods: Samples from CA1 subregion were lysed in 500 μl lysis buffer and centrifuged. After centrifugation, supernatant was incubated with monoclonal mouse antibody against Piwil2 (Santa Cruz, California, CA, USA), preincubated with Protein A/G Agarose. The beads were washed twice with lysis buffer. After quality check by Western blot, the RNA was extracted from the magnetic beads using Trizol reagent (Invitrogen). Then, the immunoprecipitated RNA was analyzed with piRNAs sequencing.
Results: After tGCI, a total of 423 piRNAs interacted with Piwil2 in CA1 was upregulated after 26 h of reperfusion. Of the 423 piRNAs, 317 were significantly upregulated by more than 1.5-fold. Of the 317 piRNAs, 258 showed ≥2-fold change. Comparison between tGCI and HPC groups revealed that 401 piRNAs interacted with Piwil2 in CA1 were significantly downregulated after HPC, whereas only 7 piRNAs were found to be altered in all 3 groups studied (≥1.5-fold change).
Conclusions: In our study, we identified a cohort of piRNAs in CA1 of rats. We demonstrated directly contrast changes of piRNAs interacted with Piwil2 in CA1 after tGCI, as compared to those in HPC rats. The results of the prediction showed that DNMT3A may be a potential common target of the 7 differentially expressed piRNAs interacted with Piwil2. Therefore, we focused on the expression of DNMT3A in CA1 after tGCI with or without HPC.
|
| |
|
| Overall design |
Brain hippocampal piRNA profiles in CA1 region of 7-8 weeks-old adult male Wistar rats（Sham,tGCI and HPC group, three replicates for each group. ）
|
| |
|
| Contributor(s) |
Zhan L, Chen M, Pang T, Li X, Long L, Liang D, Peng L, Sun W, Xu E |
| Citation(s) |
35794855 |
| Submission date |
Dec 16, 2020 |
| Last update date |
Jan 18, 2023 |
| Contact name |
Astrame Chen |
| Organization name |
Guangzhou Medical University
|
| Street address |
Xinzao town, Panyu district
|
| City |
Guangzhou |
| ZIP/Postal code |
510180 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL22396 |
Illumina HiSeq 4000 (Rattus norvegicus) |
|
| Samples (4)
|
| GSM4976843 |
Brain hippocampal CA1 region Sham RIP-seq |
| GSM4976844 |
Brain hippocampal CA1 region tGCI26h RIP-seq |
| GSM4976845 |
Brain hippocampal CA1 region HPC0h RIP-seq |
| GSM4976846 |
Brain hippocampal CA1 region IgG RIP-seq |
|
| Relations |
| BioProject |
PRJNA685653 |
| SRA |
SRP298094 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE163299_RIP_piRNA_Expression.xlsx |
363.2 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...