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Series GSE14902 Query DataSets for GSE14902
Status Public on Nov 24, 2009
Title The relationship between brain mRNA levels and behaviour among inbred Lewis rats: Experiment 1
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Behaviour is derived from complex molecular interactions within the brain, in response to specific environmental stimuli. In some rare cases, the direct causes of behaviour have been attributed to the interactions of a single or small group of gene transcripts and proteins. We conducted two experiments with the hope of defining some of the molecular interactors for four separate behaviours: sugar feeding, locomotor activity in a novel field, and acoustic startle reflex, and prepulse inhibition of the acoustic startle reflex, which have been linked to prefrontal cortex dopaminergic function or as predictors of sensorimotor gating in diseases such as schizophrenia. Rats with high and low response phenotypes were selected to determine the differences between these two extremes of behaviour. From our analyses, transcripts of Homer1, a neuronal scaffolding protein which interacts with group1 metabotropic glutamate receptors, were found to be significantly correlated with array data in both experiments, and with behaviour data across three separate tests in the second experiment, indicating that this gene's transcripts and probably downstream protein interactions have a significant correlation with behaviour phenotype in the inbred Lewis rat. Future areas of pursuit for this data should involve modification of the expression of Homer1 in an isolated fashion to determine a pharmacological threshold for differences in behaviour.

Keywords: Phenotype-Association Study
 
Overall design Nine rats with varying behavioural phenotypes were analyzed. Three behavioural tests: SF, locomotion, and ASR.
 
Contributor(s) Feldcamp LA, Boutros PC, Rotzinger S, Semeralul MO, Vaccarino F, Petronis A, Wong AH
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Submission date Feb 19, 2009
Last update date Mar 03, 2017
Contact name Paul C Boutros
E-mail(s) Paul.Boutros@utoronto.ca
Organization name Ontario Institute for Cancer Research
Street address 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL341 [RAE230A] Affymetrix Rat Expression 230A Array
Samples (9)
GSM372266 Rat_prefrontal_cortex-rep1-expt1
GSM372267 Rat_prefrontal_cortex-rep2-expt1
GSM372268 Rat_prefrontal_cortex-rep3-expt1
This SubSeries is part of SuperSeries:
GSE14904 The relationship between brain mRNA levels and behaviour among inbred Lewis rats
Relations
BioProject PRJNA114387

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE14902_RAW.tar 21.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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