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Series GSE141498 Query DataSets for GSE141498
Status Public on Jan 28, 2020
Title Immunological fingerprints of controllers developing neutralizing HIV-1 antibodies
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Induction of broadly neutralizing antibodies (bnAbs) is highly desired for an effective vaccine against HIV-1. Typically, bnAbs develop in patients with high viremia, but can also evolve in some untreated HIV-1 controllers with low viral loads. Here, we identify a subgroup of neutralizer-controllers characterized by myeloid DC (mDCs) with a distinct inflammatory signature and a superior ability to prime T follicular helper (Tfh)-like cells in an STAT4-dependent fashion. This distinct immune profile is associated with a higher frequency of Tfh-like cells in peripheral blood (pTfh) and an enrichment for Tfh-defining genes in circulating CD4+ T cells. Correspondingly, Monocytes from this neutralizer controller subgroup upregulate genes encoding for chemotaxis and inflammation, and secrete high levels of IL-12 in response to TLR stimulation. Together, our results suggest multi-compartment immune networks between mDCs, Tfh and Monocytes that might facilitate development of bnAbs in a subgroup of HIV-1 controllers.
 
Overall design RNAseq study from 4 different immune populations: Dendritic cells, CD4 T cells, Monocytes and B cells from two groups of HIV-1 controllers classified by the presence or the absence of a broader breadth of neutralizing antibodies against HIV-1 on plasma.
 
Contributor(s) Martin-Gayo E, Gao C, Chen H, Ouyang Z, Kim D, Kolb KE, Shalek AK, Walker BD, Lichterfeld M, Yu XG
Citation(s) 31995767
Submission date Dec 04, 2019
Last update date Jan 31, 2020
Contact name Ce Gao
E-mail(s) CGAO4@MGH.HARVARD.EDU
Organization name Ragon Institute of MGH, MIT and Harvard
Lab Yu/Lichterfeld Labs
Street address 400 Technology Square
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (209)
GSM4204879 Bcells for Patient EMG-EC-001
GSM4204880 Bcells for Patient EMG-EC-002
GSM4204881 Bcells for Patient EMG-EC-003
Relations
BioProject PRJNA593611
SRA SRP234745

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Supplementary file Size Download File type/resource
GSE141498_RawCounts.csv.gz 5.7 Mb (ftp)(http) CSV
GSE141498_TPM.csv.gz 7.5 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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