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Series GSE138760 Query DataSets for GSE138760
Status Public on Dec 31, 2019
Title High resolution and allelic-specific annotation of preimplantation embryo transcriptome using long-read sequencing
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We used an combination of long-read and short-read sequencing data to explore the transcriptome of preimplantation embryo
 
Overall design We selected 7 stage of early embryo including sperm and oocyte from ♂DBA/2J and ♀C57/BL6J and sequenced using Pacbio and Illumina
 
Contributor(s) Shisheng H, Chao R, Jie Y, Yunbo Q, Zhen L, Wenjie S
Citation(s) 32461551
Submission date Oct 11, 2019
Last update date Jun 08, 2020
Contact name Wenjie Shu
E-mail(s) shuwj@bmi.ac.cn
Organization name Beijing Institute of Radiation Medicine
Street address Taiping Road 27
City Beijing
ZIP/Postal code 100850
Country China
 
Platforms (2)
GPL24198 Sequel (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (21)
GSM4118731 DBA/2J sperm cells rep1
GSM4118732 DBA/2J sperm cells rep2
GSM4118733 C57/BL6J oocyte cells rep1
Relations
BioProject PRJNA577068
SRA SRP225196

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138760_RAW.tar 6.0 Mb (http)(custom) TAR (of GFF, TXT)
GSE138760_merged.total.gtf.gz 1.6 Mb (ftp)(http) GTF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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