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| Status |
Public on May 22, 2019 |
| Title |
ATAC-seq of BCSCsSETD4 and BCSCsGFP |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We report the ATAC-SEQ results of BCSCsSETD4 and BCSCsGFP. To explore epigenetic regulation mechnism in BCSC quiescence, Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-seq) were performed in BCSCsSETD4 and BCSCsGFP. Quiescent BCSCsSETD4 showed marked enrichment of H4K20me3 modifications relative to BCSCsGFP.
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| Overall design |
Examination of the chromatin structure using ATAC-seq in BCSCsSETD4 and BCSCsGFP.
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| Contributor(s) |
Sen Y, Yan-Fu D, Wen-Huan J, Jing-Yi F, Qian Z, Xiao-Li L, Sun-Li C, Xue-Ting H, Yao-Shun Y, Qian-Yun L, Jin-Shu Y, Sheng-Nan J, Guo-Ping D, Yue-Hong W, Jiao-Jiao Z, Yi-Ding C, Wei-Jun Y |
| Citation(s) |
31308046 |
| Submission date |
May 21, 2019 |
| Last update date |
Oct 25, 2019 |
| Contact name |
sen ye |
| E-mail(s) |
21307059@zju.edu.cn
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| Phone |
+8657188206365
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| Organization name |
Zhejiang University
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| Street address |
866 Yuhangtang Rd, Hangzhou, Zhejiang Province, P.R. China
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| City |
Hangzhou |
| State/province |
Zhejiang |
| ZIP/Postal code |
310058 |
| Country |
China |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA544096 |
| SRA |
SRP199119 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE131586_SETD4_vs_GFP_peak_compare_table.tsv.gz |
439.8 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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