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| Status |
Public on Jun 30, 2019 |
| Title |
Specificity assessment of allele selective Zinc Finger Protein Repressors in hESC-derived HD neurons |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Huntington’s disease (HD) is a dominantly inherited neurodegenerative disorder caused by a CAG trinucleotide expansion in the huntingtin gene (HTT), which codes for the pathologic mutant HTT (mHTT) protein. Since normal HTT is thought to be important for brain function, we engineered zinc finger protein transcription factors (ZFP-TFs) to target the pathogenic CAG repeat and selectively lower mHTT as a therapeutic strategy. Using patient-derived fibroblasts and neurons, we demonstrate that ZFP-TFs selectively repress >99% of HD-causing alleles over a wide dose range, while preserving expression of >86% of normal alleles. Other CAG-containing genes are minimally affected, and virally delivered ZFP-TFs are active and well tolerated in HD neurons beyond 100 days in culture and at least 9 months in the mouse brain. Using three HD mouse models, we demonstrate improvements in a range of molecular, histopathological, electrophysiological, and functional endpoints. Our findings support the continued development of an allele-selective ZFP-TF for the treatment of HD.
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| Overall design |
Four treatments (ZFP-A, ZFP-B, ZFP-C, GFP) were tested in neurons derived from HD hESCs (GENEA020). Each ZFP was tested in a different batch with the GFP control. For each batch of treatment and control, 4 replicate transfections were conducted yielding 4 biological replicates. Cells were harvested 24 hours later and processed for total RNA isolation and Affymetrix sample Prep. The same control GFP treatment was used for each batch.
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| Contributor(s) |
Zeitler B, Froelich S, Marlen K, Shivak DA, Yu Q, Li D, Pearl JR, Miller JC, Zhang L, Paschon DE, Hinkley SJ, Ankoudinova I, Lam S, Guschin D, Kopan L, Cherone JM, Nguyen HB, Qiao G, Ataei Y, Mendel MC, Amora R, Surosky R, Laganiere J, Vu BJ, Narayanan A, Sedaghat Y, Tillack K, Thiede C, Gärtner A, Kwak S, Bard J, Mrzljak L, Park L, Heikkinen T, Lehtimäki KK, Svedberg MM, Häggkvist J, Tari L, Tóth M, Varrone A, Halldin C, Kudwa AE, Ramboz S, Day M, Kondapalli J, Surmeier DJ, Urnov FD, Gregory PD, Rebar EJ, Munoz-Sanjuan I, Zhang HS |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 04, 2019 |
| Last update date |
Jul 02, 2019 |
| Contact name |
Bryan Zeitler |
| E-mail(s) |
bzeitler@sangamo.com
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| Organization name |
Sangamo Therapeutics
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| Street address |
501 Canal Blvd.
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| City |
Richmond |
| State/province |
California |
| ZIP/Postal code |
94804 |
| Country |
USA |
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| Platforms (1) |
| GPL15207 |
[PrimeView] Affymetrix Human Gene Expression Array |
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| Samples (24)
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| GSM3639377 |
Neurons 24 hr ZFPC batch1 biological rep1 |
| GSM3639378 |
Neurons 24 hr ZFPC batch1 biological rep2 |
| GSM3639379 |
Neurons 24 hr ZFPC batch1 biological rep3 |
| GSM3639380 |
Neurons 24 hr ZFPC batch1 biological rep4 |
| GSM3639381 |
Neurons 24 hr GFP batch1 biological rep1 |
| GSM3639382 |
Neurons 24 hr GFP batch1 biological rep2 |
| GSM3639383 |
Neurons 24 hr GFP batch1 biological rep3 |
| GSM3639384 |
Neurons 24 hr GFP batch1 biological rep4 |
| GSM3639385 |
Neurons 24 hr ZFPA batch2 biological rep1 |
| GSM3639386 |
Neurons 24 hr ZFPA batch2 biological rep2 |
| GSM3639387 |
Neurons 24 hr ZFPA batch2 biological rep3 |
| GSM3639388 |
Neurons 24 hr ZFPA batch2 biological rep4 |
| GSM3639389 |
Neurons 24 hr GFP batch2 biological rep1 |
| GSM3639390 |
Neurons 24 hr GFP batch2 biological rep2 |
| GSM3639391 |
Neurons 24 hr GFP batch2 biological rep3 |
| GSM3639392 |
Neurons 24 hr GFP batch2 biological rep4 |
| GSM3639393 |
Neurons 24 hr ZFPB batch3 biological rep1 |
| GSM3639394 |
Neurons 24 hr ZFPB batch3 biological rep2 |
| GSM3639395 |
Neurons 24 hr ZFPB batch3 biological rep3 |
| GSM3639396 |
Neurons 24 hr ZFPB batch3 biological rep4 |
| GSM3639397 |
Neurons 24 hr GFP batch3 biological rep1 |
| GSM3639398 |
Neurons 24 hr GFP batch3 biological rep2 |
| GSM3639399 |
Neurons 24 hr GFP batch3 biological rep3 |
| GSM3639400 |
Neurons 24 hr GFP batch3 biological rep4 |
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| Relations |
| BioProject |
PRJNA525455 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE127821_RAW.tar |
52.4 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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