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Series GSE114456 Query DataSets for GSE114456
Status Public on May 01, 2024
Title Integrative and Quantitative Analysis of Tumor Progression Reveals Fundamental Properties of Glioblastoma
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Principle of tumor growth is one fundamental aspect of cancer biology and it remains to be superficially understood. Here we developed a set of genetic and mathematic tools allow integrative analysis of mouse glioblastoma (GBM) progression. Quantitative temporal imaging of mouse GBM and mathematic modeling suggest that mouse GBM grows exponentially, which led to the discovery that a sustainable exponential growth requires outward migrating brain tumor stem cells (BTSCs). Quantitative single cell tracing of BTSCs in vivo unravels symmetric expansion of BTSCs, asymmetric differentiation, and a non-reversible differentiation process during tumor progression. Mosaic tracing of BTSCs and non-BTSCs reveals a cellular temporal dynamic changes and cellular turnover. These experimentally collected parameters were integrated step by step to a quantitative mathematic model of GBM growth, which faithfully predicts tumor cellular architecture, tumor response to chemotherapy and BTSC therapy. Bulk and single cell RNA-Seq reveals distinct molecular hierarchy and molecular heterogeneity in BTSCs, which was confirmed by analyzing human GBM single cell RNA-Seq results. This study reveals basic developmental principles that govern tumor development, which provides novel understanding of cancer development, tumor heterogeneity and new approaches to treat GBM.
 
Overall design We performed single-cell RNAseq and bulk RNAseq from brain tumour cells and brain tumour stem cells from mice.
The sample titles represent:
B = bulk RNA-seq
S = single-cell RNA-seq
G = brain tumor stem cells
R = brain tumor cells
 
Contributor(s) Shao C, Liu H
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date May 15, 2018
Last update date May 01, 2024
Contact name Haikun Liu
E-mail(s) l.haikun@dkfz.de
Organization name DKFZ
Street address INF 581
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (152)
GSM3142044 GB1-4
GSM3142045 GB1-3
GSM3142046 GB1-2
Relations
BioProject PRJNA471501
SRA SRP147371

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114456_raw.count.txt.gz 1.7 Mb (ftp)(http) TXT
GSE114456_raw.tpm.txt.gz 2.0 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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