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Series GSE106586 Query DataSets for GSE106586
Status Public on Nov 07, 2017
Title BMAL1-deficiency contributes to mandibular dysplasia by upregulating MMP3
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Skeletal mandibular hypoplasia (SMH), one of the common types of craniofacial deformities, seriously affects appearance, chewing, pronunciation, and breathing. Moreover, SMH is prone to inducing obstructive sleep apnea syndrome. We found that brain and muscle ARNT-like 1 (BMAL1), the core component of the molecular circadian oscillator, was significantly decreased in mandibles of juvenile SMH patients. Accordingly, SMH was observed in circadian rhythm-disrupted or BMAL1-deficiency mice. RNA sequencing and protein chip analyses suggested that matrix metallopeptidase 3 (MMP3) is the potential target of BMAL1 during the mandibular developmental process. Interestingly, in juvenile SMH patients, we observed that MMP3 level was increased obviously. Consistently, MMP3 was upregulated during the whole growth period of 3 to 10 weeks in Bmal1-/- mice. Given these findings, we set to characterize the underlying mechanism and found that BMAL1-deficiency enhanced Mmp3 transcription through activating p65 phosphorylation. Together our results provide new insight into the mechanism by which BMAL1 is implicated in the pathogenesis of SMH
 
Overall design To gain an independent assessment of the regulatory targets of BMAL1 in Bmal1-/- mBMSCs
 
Contributor(s) Zhao J, Chen L
Citation(s) 29276151
Submission date Nov 06, 2017
Last update date Jul 10, 2019
Contact name Lili Chen
E-mail(s) tangting-0@qq.com
Organization name Union Hospital, Tongji Medical College Huazhong University of Science and Technology
Street address 1277 Jiefang Avenue
City Wuhan
State/province Hubei
ZIP/Postal code 430022
Country China
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (5)
GSM2843480 KO#1
GSM2843481 KO#2
GSM2843482 KO#3
Relations
BioProject PRJNA417294
SRA SRP124290

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Supplementary file Size Download File type/resource
GSE106586_RAW.tar 10.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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