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Series GSE103603 Query DataSets for GSE103603
Status Public on Nov 12, 2017
Title Staufen1 inhibits MyoD translation to actively maintain muscle stem cell quiescence
Organism Mus musculus
Experiment type Other
Summary Tissue regeneration depends on the timely activation of adult stem cells. In skeletal muscle, the adult stem cells maintain a quiescent state and proliferate upon injury. We show that muscle stem cells (MuSCs) use direct translational repression to maintain the quiescent state. High resolution single molecule and single cell analyses demonstrate that quiescent MuSCs express high levels of Myogenic Differentiation1 (MyoD) transcript in vivo, whereas MyoD protein is absent. RNA pulldowns and co-stainings show that MyoD mRNA interacts with Staufen1, a potent regulator of mRNA localization, translation, and stability. Staufen1 prevents MyoD translation through its interaction with the MyoD 3’UTR. MuSCs from Staufen1 heterozygous (Staufen1+/-) mice have increased MyoD protein expression, exit quiescence, and begin proliferating. Conversely, blocking MyoD translation maintains the quiescent phenotype. Collectively, our data show that MuSCs express MyoD mRNA and actively repress its translation to remain quiescent yet primed for activation.
 
Overall design Anti-Staufen1 RIP-seq in quiescent MuSCs
 
Contributor(s) Rando TA, de Morree A, van Velthoven CT
Citation(s) 29073096
Submission date Sep 07, 2017
Last update date May 15, 2019
Contact name Cindy van Velthoven
E-mail(s) cindy.vanvelthoven@alleninstitute.org
Phone +12065487000
Organization name Allen Institute
Street address 615 Westlake Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (5)
GSM2775159 Stau_RIP_WT1
GSM2775160 Stau_RIP_WT2
GSM2775161 Stau_RIP_WT3
Relations
BioProject PRJNA402057
SRA SRP117056

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103603_StauRIP_annotated_counts_20170124.txt.gz 1.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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