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Series GSE102559 Query DataSets for GSE102559
Status Public on Aug 22, 2017
Title Cooperative and Antagonistic effects on SWI/SNF occupancy following BRG1 loss [ChIP-seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We monitored changes to genomic binding of BRG1 andBRM following BRG1 or BRM loss to understand how disuprtion of one member of the SWI/SNF complex affected remaining forms of the complex present in the cell.
 
Overall design ChIP-seq was performed for BRG1 and BRM in HepG2 cells treated with non-targeting, BRG1 shRNA , or BRM shRNA
 
Contributor(s) Raab J
Citation Jesse Raab, John S. Runge, Camarie C. Spear, and Terry Magnuson. Co-regulation of transcription by BRG1 and BRM, two mutually exclusive SWI/SNF ATPase subunits. bioRxiv 178848, 2017. doi:10.1101/178848
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 HD036655 Developmental Gene Regulation Via Chromatin Remodeling UNIVERSITY OF NORTH CAROLINA AT CHAPEL HILL Terry R Magnuson
Submission date Aug 11, 2017
Last update date Jul 25, 2021
Contact name Jesse Raab
E-mail(s) jesse.r.raab@gmail.com
Organization name University of North Carolina Chapel Hill
Department Genetics
Street address 120 Mason Farm Rd
City Chapel Hill
ZIP/Postal code 27599
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (38)
GSM2740926 BRG1 CHIP-seq in shBRG1 Rep1
GSM2740927 BRG1 CHIP-seq in shBRG1 Rep2
GSM2740928 BRG1 CHIP-seq in shNS Rep1
This SubSeries is part of SuperSeries:
GSE102561 Co-regulation of transcription by BRG1 and Brm, two mutually exclusive SWI/SNF ATPase subunits
Relations
BioProject PRJNA398037
SRA SRP115303

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102559_Brg1_shBrg1.merged.bw 330.4 Mb (ftp)(http) BW
GSE102559_Brg1_shBrg1_peaks.filtered.narrowPeak.annotated.csv.gz 389.7 Kb (ftp)(http) CSV
GSE102559_Brg1_shBrm.merged.bw 378.1 Mb (ftp)(http) BW
GSE102559_Brg1_shBrm_peaks.filtered.narrowPeak.annotated.csv.gz 207.9 Kb (ftp)(http) CSV
GSE102559_Brg1_shNS.merged.bw 340.4 Mb (ftp)(http) BW
GSE102559_Brg1_shNS_peaks.filtered.narrowPeak.annotated.csv.gz 926.9 Kb (ftp)(http) CSV
GSE102559_Brm_shBrg1.merged.bw 345.1 Mb (ftp)(http) BW
GSE102559_Brm_shBrg1_peaks.filtered.narrowPeak.annotated.csv.gz 239.9 Kb (ftp)(http) CSV
GSE102559_Brm_shBrm.merged.bw 397.5 Mb (ftp)(http) BW
GSE102559_Brm_shBrm_peaks.filtered.narrowPeak.annotated.csv.gz 2.4 Kb (ftp)(http) CSV
GSE102559_Brm_shNS.merged.bw 361.6 Mb (ftp)(http) BW
GSE102559_Brm_shNS_peaks.filtered.narrowPeak.annotated.csv.gz 335.7 Kb (ftp)(http) CSV
GSE102559_Input_shBrg1.merged.bw 243.3 Mb (ftp)(http) BW
GSE102559_Input_shNS.merged.bw 232.4 Mb (ftp)(http) BW
GSE102559_RAW.tar 1.8 Gb (http)(custom) TAR (of BW)
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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