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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 05, 2008 |
| Title |
Illumina HumanHap550 Genotyping BeadChip v3 |
| Technology type |
oligonucleotide beads |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
Illumina, Inc. |
| Manufacture protocol |
See manufacturer's website (http://illumina.com)
|
| Catalog number |
WG-30-503 |
| |
|
| Description |
Version 3, Illumina Sentrix HumanHap550 Genotyping BeadChip
|
| |
|
| Web link |
http://illumina.com/pages.ilmn?ID=154
|
| Submission date |
Jan 29, 2008 |
| Last update date |
Nov 28, 2016 |
| Contact name |
GEO admin |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
|
| Organization name |
NCBI/NLM/NIH
|
| Street address |
9000 Rockville Pike
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Samples (671)
|
GSM264419, GSM264420, GSM264421, GSM264422, GSM264423, GSM264424
GSM264425, GSM264426, GSM264427, GSM264428, GSM264429, GSM264430, GSM264431, GSM264432, GSM264433, GSM264434, GSM264435, GSM264436, GSM264437, GSM264438, GSM264439, GSM264440, GSM264441, GSM264442, GSM264443, GSM264444, GSM264445, GSM264446, GSM264447, GSM264448, GSM264449, GSM264450, GSM264451, GSM264452, GSM264453, GSM264454, GSM264455, GSM264456, GSM264457, GSM264458, GSM264459, GSM264460, GSM264461, GSM264462, GSM264463, GSM264464, GSM264465, GSM264466, GSM264467, GSM264468, GSM264469, GSM264470, GSM264471, GSM264472, GSM264473, GSM264474, GSM264475, GSM264476, GSM264477, GSM264478, GSM264479, GSM264480, GSM264481, GSM264482, GSM264483, GSM264484, GSM264485, GSM264486, GSM264487, GSM264488, GSM264489, GSM264490, GSM264491, GSM264492, GSM264493, GSM264494, GSM264495, GSM264496, GSM264497, GSM264498, GSM264499, GSM264500, GSM264501, GSM264502, GSM264503, GSM264504, GSM264505, GSM264506, GSM264507, GSM264508, GSM264509, GSM264510, GSM264511, GSM264512, GSM264513, GSM264514, GSM264515, GSM264516, GSM264517, GSM264522, GSM264523, GSM264524, GSM264525, GSM264526, GSM264527, GSM264528, GSM264529, GSM264530, GSM264531, GSM264532, GSM264533, GSM264534, GSM264535, GSM264536, GSM264537, GSM264538, GSM264539, GSM264540, GSM264541, GSM264542, GSM264543, GSM264544, GSM264545, GSM264546, GSM264547, GSM264548, GSM264549, GSM264550, GSM264551, GSM264552, GSM264553, GSM264554, GSM264555, GSM264556, GSM264557, GSM264559, GSM264560, GSM264561, GSM264562, GSM264563, GSM264564, GSM264565, GSM264566, GSM264567, GSM264568, GSM264569, GSM264570, GSM264571, GSM264572, GSM264574, GSM264575, GSM264576, GSM264577, GSM264578, GSM264579, GSM264580, GSM264581, GSM264582, GSM264583, GSM264584, GSM264585, GSM264586, GSM264587, GSM264588, GSM264589, GSM264590, GSM264591, GSM264592, GSM264593, GSM264594, GSM264595, GSM264596, GSM264597, GSM264598, GSM264599, GSM264600, GSM264601, GSM264602, GSM264603, GSM264604, GSM264605, GSM264606, GSM264607, GSM264608, GSM264609, GSM264610, GSM264611, GSM264612, GSM264613, GSM264614, GSM264615, GSM264616, GSM488747, GSM488748, GSM488749, GSM488750, GSM488751, GSM488752, GSM488753, GSM488754, GSM488755, GSM488756, GSM488757, GSM488758, GSM488759, GSM488760, GSM488761, GSM488762, GSM488763, GSM488764, GSM488765, GSM488766, GSM488767, GSM488768, GSM488769, GSM488770, GSM488771, GSM488772, GSM488773, GSM488774, GSM488775, GSM488776, GSM488777, GSM488778, GSM488779, GSM488780, GSM488781, GSM488782, GSM488783, GSM488784, GSM488785, GSM488786, GSM488787, GSM488788, GSM488789, GSM488790, GSM488791, GSM488792, GSM488793, GSM488794, GSM488795, GSM488796, GSM488797, GSM488798, GSM488799, GSM488800, GSM488801, GSM488802, GSM488803, GSM488804, GSM488805, GSM488806, GSM488807, GSM488808, GSM488809, GSM488810, GSM488811, GSM488812, GSM488813, GSM488814, GSM488815, GSM488816, GSM488817, GSM488818, GSM488819, GSM488820, GSM488821, GSM488822, GSM488823, GSM488824, GSM488825, GSM488826, GSM488827, GSM488828, GSM488829, GSM488830, GSM488831, GSM488832, GSM488833, GSM488834, GSM488835, GSM488836, GSM488837, GSM488838, GSM488839, GSM488840, GSM488841, GSM488842, GSM488843, GSM488844, GSM488845, GSM488846, GSM488847, GSM488848, GSM488849, GSM488850, GSM488851, GSM488852, GSM488853, GSM488854, GSM488855, GSM488856, GSM488857, GSM488858, GSM488859, GSM488860, GSM488861, GSM488862, GSM488863, GSM488864, GSM488865, GSM488866, GSM587284, GSM596627, GSM596628, GSM596629, GSM596630, GSM596631, GSM596632, GSM596633, GSM596634, GSM596635, GSM596636, GSM596637, GSM596638, GSM596639, GSM596640, GSM596641, GSM596642, GSM596643, GSM596644, GSM596645, GSM596646, GSM596647, GSM596648, GSM596649, GSM596650, GSM596651, GSM596652, GSM596653, GSM596654, GSM596655, GSM596656, GSM596657, GSM596658, GSM596659, GSM596660, GSM596661, GSM596662, GSM596663, GSM596664, GSM596665, GSM596666, GSM596667, GSM596668, GSM596669, GSM596670, GSM596671, GSM596672, GSM596673, GSM596674, GSM596675, GSM596676, GSM596677, GSM596678, GSM596679, GSM596680, GSM596681, GSM596682, GSM596683, GSM596684, GSM596685, GSM596686, GSM596687, GSM596688, GSM596689, GSM596690, GSM596691, GSM596692, GSM596693, GSM596694, GSM596695, GSM596696, GSM596697, GSM596698, GSM596699, GSM596700, GSM596701, GSM596702, GSM596703, GSM596704, GSM596705, GSM596706, GSM596707, GSM596708, GSM596709, GSM596710, GSM596711, GSM596712, GSM596713, GSM596714, GSM596715, GSM596716, GSM596717, GSM596718, GSM596719, GSM596720, GSM596721, GSM596722, GSM596723, GSM596724, GSM596725, GSM596726, GSM596727, GSM596728, GSM596729, GSM596730, GSM596731, GSM596732, GSM596733, GSM596734, GSM596735, GSM596736, GSM596737, GSM596738, GSM596739, GSM596740, GSM596741, GSM596742, GSM596743, GSM596744, GSM596745, GSM596746, GSM596747, GSM596748, GSM596749, GSM596750, GSM596751, GSM596752, GSM596753, GSM596754, GSM596755, GSM596756, GSM596757, GSM596758, GSM596759, GSM596760, GSM596761, GSM596762, GSM596763, GSM596764, GSM596765, GSM596766, GSM596767, GSM596768, GSM596769, GSM596770, GSM596771, GSM596772, GSM596773, GSM596774, GSM596775, GSM596776, GSM596777, GSM596778, GSM596779, GSM596780, GSM596781, GSM596782, GSM596783, GSM596784, GSM596785, GSM596786, GSM596787, GSM596788, GSM596789, GSM596790, GSM596791, GSM596792, GSM596793, GSM596794, GSM596795, GSM596796, GSM596797, GSM596798, GSM596799, GSM596800, GSM596801, GSM596802, GSM596803, GSM596804, GSM596805, GSM596806, GSM596807, GSM596808, GSM596809, GSM596810, GSM596811, GSM596812, GSM596813...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
|
| Series (7)
|
| GSE10331 |
Genotype, haplotype and copy number variation in worldwide human populations. |
| GSE19385 |
Genotyping in Neuroblastoma Primary tumors |
| GSE23813 |
Genotyping human lymphoblastoid cell lines |
| GSE23818 |
Analysis of active and inactive X chromosome architecture reveals the independent organization of 30-nm and large scale chromatin structures |
| GSE24260 |
Genome-wide SNP array data from Human Variation Panel by Illumina 550K |
| GSE24277 |
Human Variation Panel: Gene Expression and Genotype |
| GSE131189 |
Structural variation targets neurodevelopmental genes and identifies SHANK2 as a tumor suppressor in neuroblastoma |
|
| Relations |
| Alternative to |
GPL6981 (official) |
| Data table header descriptions |
| ID |
|
| SNP_ID |
SNP Name |
| PROBE |
PROBE Name |
| Alleles |
SNP alleles |
| Chromosome |
Chromosome |
| IlmnStrand |
Illumina Strand Info |
| AddressA_ID |
Illumina Address Info |
| CustomerStrand |
Illumina Strand Info |
| TopGenomicSeq |
Flanking Sequence |
| Data table |
| ID |
SNP_ID |
PROBE |
Alleles |
Chromosome |
IlmnStrand |
AddressA_ID |
CustomerStrand |
TopGenomicSeq |
| MitoA10045G-13273284_B_R_IFB1141652022:0 |
|
MitoA10045G |
[T/C] |
M |
Bot |
904860368 |
Top |
TGTGGTTTGACTATTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTTAGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGACAAC[A/G]TTCAAAAAAGAGTAATAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGG |
| MitoA10551G-13273286_T_F_IFB1141639111:0 |
|
MitoA10551G |
[A/G] |
M |
Top |
905860131 |
Top |
ATGATAATCATATTTACCAAATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCAT[A/G]TCCTCCCTACTATGCCTAGAAGGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTGCCTA |
| MitoA11252G-13273288_B_R_IFB1141661584:0 |
|
MitoA11252G |
[T/C] |
M |
Bot |
903990168 |
Top |
CTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACT[A/G]ATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAG |
| MitoA11468G-13273289_B_R_IFB1141719645:0 |
|
MitoA11468G |
[T/C] |
M |
Bot |
901990681 |
Top |
TTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTT[A/G]AAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAA |
| MitoA11813G-13273292_T_F_IFB1141667833:0 |
|
MitoA11813G |
[A/G] |
M |
Top |
904780630 |
Top |
CCCACGGACTCACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCT[A/G]CTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCA |
| MitoA12309G-13273294_T_F_IFB1141664161:0 |
|
MitoA12309G |
[A/G] |
M |
Top |
906590470 |
Top |
AGAAAGCTCACAAGAACTGCTAACTCATGCCCCCATGTCTAACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGCCCCAA[A/G]AATTTTGGTGCAACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCACCCTCGT |
| MitoA13106G-13273298_B_R_IFB1141641623:0 |
|
MitoA13106G |
[T/C] |
M |
Bot |
901740201 |
Top |
ATCAGCCCAATTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGA[A/G]TCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAACTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGT |
| MitoA13264G-13273299_T_F_IFB1141660858:0 |
|
MitoA13264G |
[A/G] |
M |
Top |
901470575 |
Top |
TAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGTAGCCTTCTCCACTTCAAGTCA[A/G]CTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAAGCCATACTATTTATGTGCT |
| MitoA13781G-13273301_T_F_IFB1141687043:0 |
|
MitoA13781G |
[A/G] |
M |
Top |
905910687 |
Top |
CACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACA[A/G]TCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATC |
| MitoA14234G-13273304_T_F_IFB1141674277:0 |
|
MitoA14234G |
[A/G] |
M |
Top |
906940170 |
Top |
ACTCCTAATCACATAACCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACCACTACTAATCAACGCCCATA[A/G]TCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAA |
| MitoA14583G-13273306_T_F_IFB1141688843:0 |
|
MitoA14583G |
[A/G] |
M |
Top |
906980021 |
Top |
CATCATTCCCCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAGT[A/G]CTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAAGCATACATCATTATTCTCGC |
| MitoA15219G-13273311_T_F_IFB1141717824:0 |
|
MitoA15219G |
[A/G] |
M |
Top |
903170484 |
Top |
AGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGG[A/G]CAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTACCCTTCATTATTGCAGC |
| MitoA15245G-13273312_B_R_IFB1141677374:0 |
|
MitoA15245G |
[T/C] |
M |
Bot |
906060722 |
Top |
TCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGG[A/G]GGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTACCCTTCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCT |
| MitoA15302G-13273313_T_F_IFB1141686491:0 |
|
MitoA15302G |
[A/G] |
M |
Top |
904490504 |
Top |
CCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTT[A/G]CCCTTCATTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCA |
| MitoA15759G-13273316_B_R_IFB1141715135:0 |
|
MitoA15759G |
[T/C] |
M |
Bot |
907550634 |
Top |
CCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCTAACCTGA[A/G]TCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCTAATCCTAATACCAACTATCTCCCT |
| MitoA15925G-13273318_T_F_IFB1141694300:0 |
|
MitoA15925G |
[A/G] |
M |
Top |
902070458 |
Top |
ACAACAATCCTAATCCTAATACCAACTATCTCCCTAATTGAAAACAAAATACTCAAATGGGCCTGTCCTTGTAGTATAAACTAATACACCAGTCTTGTAA[A/G]CCGGAGACGAAAACCTTTTTCCAAGGACAAATCAGAGAAAAAGTCTTTAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTATTCTCTG |
| MitoA16163G-13273319_T_F_IFB1141711520:0 |
|
MitoA16163G |
[A/G] |
M |
Top |
901030014 |
Top |
ATTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACAT[A/G]AAAACCCAACCCACATCAAACCCCCCCCCCCCATGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCACC |
| MitoA16164G-13273320_T_F_IFB1141715312:0 |
|
MitoA16164G |
[A/G] |
M |
Top |
903890603 |
Top |
TTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATA[A/G]AAACCCAACCCACATCAAACCCCCCCCCCCCATGCTTACAAGCAAGTACAGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAGCCACCC |
| MitoA1738G-13273322_T_F_IFB1141639534:0 |
|
MitoA1738G |
[A/G] |
M |
Top |
906660347 |
Top |
CTTAGGAGATTTCAACTTAACTTGACCGCTCTGAGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCA[A/G]ATAAAGTATAGGCGATAGAAATTGAAACCTGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAA |
| MitoA3349G-13273328_T_F_IFB1141711832:0 |
|
MitoA3349G |
[A/G] |
M |
Top |
903170039 |
Top |
GTAATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAATTCCTCTTCTTAACAACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCT[A/G]ATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAAC |
Total number of rows: 561466
Table truncated, full table size 108194 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL6434_HumanHap550v3_B.txt.gz |
59.4 Mb |
(ftp)(http) |
TXT |
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