GEO help: Mouse over screen elements for information.
Status
Public on Dec 13, 2007
Title
Illumina humanRef-8 v2.0 expression beadchip
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Homo sapiens Manufacturer
Illumina Inc.
Manufacture protocol
see manufacturer's website
Description
Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 22,000 transcript probes using the HumanRef-8 v2 beadchip.http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
Submission date
Nov 08, 2007
Last update date
Jan 18, 2013
Organization
Illumina Inc.
E-mail(s)
expression@illumina.com, techsupport@illumina.com Phone
1 800 809 4566
URL
http://www.illumina.com Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Samples (6337)
GSM265549 , GSM265550 , GSM265551 , GSM265552 , GSM277495 , GSM277496
GSM277497 ,
GSM277498 ,
GSM277499 ,
GSM277500 ,
GSM277501 ,
GSM277502 ,
GSM277503 ,
GSM277504 ,
GSM277505 ,
GSM277506 ,
GSM277507 ,
GSM277508 ,
GSM277509 ,
GSM277510 ,
GSM277511 ,
GSM277512 ,
GSM277513 ,
GSM277514 ,
GSM277515 ,
GSM277516 ,
GSM277517 ,
GSM277518 ,
GSM277519 ,
GSM277520 ,
GSM277521 ,
GSM277522 ,
GSM277523 ,
GSM277524 ,
GSM277525 ,
GSM277526 ,
GSM277527 ,
GSM277528 ,
GSM277529 ,
GSM277530 ,
GSM277531 ,
GSM277532 ,
GSM277533 ,
GSM277534 ,
GSM277535 ,
GSM277536 ,
GSM277537 ,
GSM277538 ,
GSM277539 ,
GSM277540 ,
GSM277541 ,
GSM277542 ,
GSM277543 ,
GSM277544 ,
GSM277545 ,
GSM277546 ,
GSM277547 ,
GSM277548 ,
GSM277549 ,
GSM277550 ,
GSM277551 ,
GSM277552 ,
GSM277553 ,
GSM277554 ,
GSM285608 ,
GSM285609 ,
GSM285610 ,
GSM285611 ,
GSM285612 ,
GSM285613 ,
GSM285614 ,
GSM285615 ,
GSM285616 ,
GSM285617 ,
GSM285618 ,
GSM285619 ,
GSM285620 ,
GSM285621 ,
GSM285622 ,
GSM285623 ,
GSM285624 ,
GSM285625 ,
GSM285626 ,
GSM285627 ,
GSM285628 ,
GSM285629 ,
GSM285630 ,
GSM285631 ,
GSM285632 ,
GSM285633 ,
GSM285634 ,
GSM285635 ,
GSM285636 ,
GSM285637 ,
GSM285638 ,
GSM285639 ,
GSM285640 ,
GSM285641 ,
GSM289470 ,
GSM289471 ,
GSM289472 ,
GSM289473 ,
GSM289474 ,
GSM289475 ,
GSM289476 ,
GSM289477 ,
GSM289478 ,
GSM289479 ,
GSM289480 ,
GSM289481 ,
GSM289482 ,
GSM289483 ,
GSM289484 ,
GSM289485 ,
GSM289486 ,
GSM289487 ,
GSM289488 ,
GSM289489 ,
GSM289490 ,
GSM289491 ,
GSM289492 ,
GSM289493 ,
GSM289494 ,
GSM289495 ,
GSM289496 ,
GSM289497 ,
GSM289498 ,
GSM289499 ,
GSM289500 ,
GSM289501 ,
GSM289502 ,
GSM289503 ,
GSM289504 ,
GSM289505 ,
GSM289506 ,
GSM289507 ,
GSM289508 ,
GSM289509 ,
GSM289510 ,
GSM289511 ,
GSM289512 ,
GSM289513 ,
GSM289514 ,
GSM289515 ,
GSM289516 ,
GSM289517 ,
GSM289518 ,
GSM289519 ,
GSM289520 ,
GSM289521 ,
GSM289522 ,
GSM289523 ,
GSM289524 ,
GSM289525 ,
GSM289526 ,
GSM289527 ,
GSM289528 ,
GSM289529 ,
GSM289530 ,
GSM289531 ,
GSM289532 ,
GSM289533 ,
GSM289534 ,
GSM289535 ,
GSM289536 ,
GSM289537 ,
GSM289538 ,
GSM289539 ,
GSM289540 ,
GSM289541 ,
GSM289542 ,
GSM289543 ,
GSM289544 ,
GSM289545 ,
GSM289546 ,
GSM289547 ,
GSM289548 ,
GSM289549 ,
GSM289550 ,
GSM289551 ,
GSM289552 ,
GSM289553 ,
GSM289554 ,
GSM289555 ,
GSM289556 ,
GSM289557 ,
GSM289558 ,
GSM289559 ,
GSM289560 ,
GSM289561 ,
GSM289562 ,
GSM289563 ,
GSM289564 ,
GSM289565 ,
GSM289566 ,
GSM289567 ,
GSM289568 ,
GSM289569 ,
GSM289570 ,
GSM289571 ,
GSM289572 ,
GSM289573 ,
GSM289574 ,
GSM289575 ,
GSM289576 ,
GSM289577 ,
GSM289578 ,
GSM289579 ,
GSM289580 ,
GSM289581 ,
GSM289582 ,
GSM289583 ,
GSM289584 ,
GSM289585 ,
GSM289586 ,
GSM289587 ,
GSM289588 ,
GSM289589 ,
GSM289590 ,
GSM289591 ,
GSM289592 ,
GSM289593 ,
GSM289594 ,
GSM289595 ,
GSM289596 ,
GSM289597 ,
GSM289598 ,
GSM289599 ,
GSM289600 ,
GSM289601 ,
GSM297214 ,
GSM297215 ,
GSM297216 ,
GSM297217 ,
GSM297218 ,
GSM297219 ,
GSM297220 ,
GSM297221 ,
GSM297809 ,
GSM297810 ,
GSM297811 ,
GSM297812 ,
GSM297813 ,
GSM297814 ,
GSM297815 ,
GSM297816 ,
GSM300493 ,
GSM300494 ,
GSM305443 ,
GSM305456 ,
GSM305458 ,
GSM305459 ,
GSM305460 ,
GSM305461 ,
GSM305462 ,
GSM305463 ,
GSM305464 ,
GSM305465 ,
GSM305466 ,
GSM305467 ,
GSM305468 ,
GSM305469 ,
GSM305470 ,
GSM305471 ,
GSM309316 ,
GSM309317 ,
GSM309318 ,
GSM309319 ,
GSM309320 ,
GSM309321 ,
GSM309322 ,
GSM309323 ,
GSM309324 ,
GSM309325 ,
GSM309326 ,
GSM309327 ,
GSM309328 ,
GSM309329 ,
GSM309330 ,
GSM309331 ,
GSM309332 ,
GSM309333 ,
GSM309334 ,
GSM309335 ,
GSM309336 ,
GSM309337 ,
GSM309338 ,
GSM309339 ,
GSM313343 ,
GSM313346 ,
GSM313347 ,
GSM313533 ,
GSM313534 ,
GSM315930 ,
GSM315931 ,
GSM315932 ,
GSM315933 ,
GSM315934 ,
GSM315935 ,
GSM315936 ,
GSM315937 ,
GSM315938 ,
GSM315939 ,
GSM315940 ,
GSM315941 ,
GSM315942 ,
GSM315943 ,
GSM315944 ,
GSM315945 ,
GSM315946 ,
GSM315947 ,
GSM315948 ,
GSM315949 ,
GSM315950 ,
GSM315951 ,
GSM315952 ,
GSM315953 ,
GSM318170 ,
GSM318171 ,
GSM318172 ,
GSM318173 ,
GSM318174 ,
GSM318175 ,
GSM318176 ,
GSM318177 ,
GSM318178 ,
GSM318179 ,
GSM318180 ,
GSM318181 ,
GSM318182 ,
GSM318183 ,
GSM318184 ,
GSM318185 ,
GSM318186 ,
GSM318187 ,
GSM318188 ,
GSM318189 ,
GSM318190 ,
GSM318191 ,
GSM318192 ,
GSM318193 ,
GSM318194 ,
GSM318195 ,
GSM318196 ,
GSM318197 ,
GSM318198 ,
GSM318199 ,
GSM318200 ,
GSM318201 ,
GSM318202 ,
GSM318203 ,
GSM318204 ,
GSM318205 ,
GSM318206 ,
GSM318207 ,
GSM318208 ,
GSM318209 ,
GSM343922 ,
GSM343923 ,
GSM343924 ,
GSM343925 ,
GSM343926 ,
GSM343927 ,
GSM343928 ,
GSM343929 ,
GSM343930 ,
GSM343931 ,
GSM343932 ,
GSM343933 ,
GSM343934 ,
GSM343935 ,
GSM343936 ,
GSM343937 ,
GSM343938 ,
GSM343939 ,
GSM343940 ,
GSM343941 ,
GSM343942 ,
GSM343943 ,
GSM343944 ,
GSM343945 ,
GSM343946 ,
GSM343947 ,
GSM343948 ,
GSM343949 ,
GSM343950 ,
GSM343951 ,
GSM343952 ,
GSM343953 ,
GSM343954 ,
GSM343955 ,
GSM343956 ,
GSM343957 ,
GSM343958 ,
GSM343959 ,
GSM343960 ,
GSM343961 ,
GSM343962 ,
GSM343963 ,
GSM343964 ,
GSM343965 ,
GSM343966 ,
GSM343967 ,
GSM343968 ,
GSM343969 ,
GSM343970 ,
GSM343971 ,
GSM343972 ,
GSM343973 ,
GSM343974 ,
GSM343975 ,
GSM343976 ,
GSM343977 ,
GSM343978 ,
GSM343979 ,
GSM343980 ,
GSM343981 ,
GSM343982 ,
GSM343983 ,
GSM343984 ,
GSM343985 ,
GSM343986 ,
GSM343987 ,
GSM343988 ,
GSM343989 ,
GSM343990 ,
GSM343991 ,
GSM343992 ,
GSM343993 ,
GSM343994 ,
GSM343995 ,
GSM343996 ,
GSM343997 ,
GSM343998 ,
GSM343999 ,
GSM344000 ,
GSM344001 ,
GSM344002 ,
GSM344003 ,
GSM344004 ,
GSM344005 ,
GSM344006 ,
GSM344007 ,
GSM344008 ,
GSM344009 ,
GSM344010 ,
GSM344011 ,
GSM344012 ,
GSM344013 ,
GSM344014 ,
GSM344024 ,
GSM344025 ,
GSM344026 ,
GSM344027 ,
GSM344028 ,
GSM344029 ,
GSM344030 ,
GSM344031 ,
GSM344032 ,
GSM344033 ,
GSM344034 ,
GSM344035 ,
GSM344036 ,
GSM344037 ,
GSM344038 ,
GSM344039 ,
GSM344040 ,
GSM344041 ,
GSM344042 ,
GSM344043 ,
GSM344044 ,
GSM344045 ,
GSM344046 ,
GSM344047 ,
GSM344048 ,
GSM344049 ,
GSM344050 ,
GSM344051 ,
GSM344052 ,
GSM344053 ,
GSM344054 ,
GSM344055 ,
GSM344056 ,
GSM344714 ,
GSM344715 ,
GSM344716 ,
GSM344718 ,
GSM353252 ,
GSM353253 ,
GSM353254 ,
GSM353255 ,
GSM353256 ,
GSM353257 ,
GSM353258 ,
GSM353259 ,
GSM353260 ,
GSM353261 ,
GSM353262 ,
GSM353263 ,
GSM353264 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (137)
GSE10003 Gene expression profile of H187-63AR, an ABT-737 resistant derivative of H187
GSE10950 Comparing gene expression in human colon tumor vs paired normal colon mucosa
GSE10952 Gene expression in colon cancer cell lines
GSE10972 Colon cancer
GSE11302 Gene expression analysis upon exposure of hESCs to novel set of self-renewal and differentiation compounds
GSE11501 Primary human leucocyte RNA expression of unrelated celiac disease cases and unrelated healthy controls.
GSE11701 Genes modulated by miR-205 in DU145 prostate cancer cells
GSE11757 Cell cycle dependent variation of a CD133 epitope in human embryonic stem cell, colon cancer and melanoma cell lines.
GSE11892 A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
GSE12110 Gene expression profiling of overexpression of myocardin
GSE12299 Gene expression in response to depletion of specific human histone H1 isoforms.
GSE12478 Induction of developmental and inflammatory transcriptomes in PGP fibroblasts
GSE12615 Ovarian Cancer Cell Lines pre-microRNA Transfection
GSE12669 Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome
GSE13699 Immune response to the yellow fever vaccine 17D.
GSE13710 MKL1 promotes megakaryocytic differentiation in HEL cells
GSE13774 Nuclear scaffold and matrix attachment of HeLa chromatin
GSE13792 Nuclear scaffold and matrix attachment of Aortic Adventitial Fibroblast (AoAF) chromatin
GSE14078 Normal fertile Spermatozoal RNA Profiles
GSE14632 DNA microarray analysis of the anti-inflammatory effects of PDTC on IL-6 signaling in HepG2 cells
GSE15208 Gene Expression in the Human Mammary Epithelium during Lactation: the Milk Fat Globule Transcriptome through 4 Days
GSE15301 Identification of brain transcriptional variability reproduced in peripheral blood: an approach for mapping brain eQTLs
GSE15678 Population genomics in a disease targeted primary cell model
GSE15745 Abundant Quantitative Trait Loci for CpG Methylation and Expression Across Human Brain Tissues
GSE15933 Analysis of Gene Expression changes in human intestinal endothelial-to-mesenchymal transition - UNTREATED/CONTROL GROUP
GSE15934 Analysis of Gene Expression changes in human intestinal endothelial-to-mesenchymal transition - TRANSFORMED GROUP
GSE15975 Analysis of Gene Expression changes in human intestinal endothelial-to-mesenchymal transition
GSE16487 Gene expression profiling of human mammary artery media during aging
GSE16984 Comparability and concordance of replicated microarray data.
GSE16987 A new gene expression signature, the ClinicoMolecular Triad Classification, may improve prediction and prognostication of breast cancer at the time of diagnosis
GSE17501 Nuclear Matrix Association in Proliferative and Invasive Cytotrophoblasts
GSE17503 Comparative gene expression profiling between cultured and tissue human skeletal muscle
GSE17764 Expression profiles associated with BRCA1 and BRCA2 mutation status in familial breast cancer patients
GSE18014 Gene expression profile after CCM1 over expression in human umbilical vein endothelial cells
GSE18044 Effect of maternal tobacco smoke exposure on the placental transcriptome
GSE18885 Expression data from human Wegener’s granulomatosis patients and normal controls in PBMCs and in PMNs
GSE19082 IL6 - IFNγ crosstalk experiment
GSE20055 HLA-B35 upregulates ET-1 and downregulates eNOS via ER stresss response in endothelial cells
GSE20129 Atherosclerosis study using female peripheral blood samples
GSE20332 Primary human leukocyte RNA expression of unrelated Dutch and UK individuals
GSE21260 Genome-wide analysis of poly(I:C)-responsive gene expression by primary human keratinocytes with and without episomal human papillomavirus
GSE21410 Global analysis of the impact of environmental perturbation on cis-regulation of gene expression: BMP2, 2hr
GSE21702 A role for the atopy-associated gene PHF11 in T-cell activation and viability.
GSE21725 Global analysis of the impact of environmental perturbation on cis-regulation of gene expression: DEX, 24hr
GSE21726 Global analysis of the impact of environmental perturbation on cis-regulation of gene expression: PGE2, 24hr
GSE21727 Global analysis of the impact of environmental perturbation on cis-regulation of gene expression: control and variety of treatments, 2hr and 24hr
GSE21728 Global analysis of the impact of environmental perturbation on cis-regulation of gene expression
GSE21748 Time-dependent expressed markers and their characterization for premature senescence induced by ionizing radiation in MCF7
GSE21862 Gene expression on 144 arrays representing 125 workers exposed to a range of benzene exposures
GSE22206 Homozygous BUB1B mutation and susceptibility to multi-site gastrointestinal neoplasia
GSE22324 Mapping of disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes
GSE22402 Genome-wide analysis of gene expression response upon infection with Toxoplasma gondii
GSE22970 Systemic transcriptome alternation under mtDNA depletion in 143B TK- osteosarcoma cells
GSE23289 HUVECs cultured under normal or high laminar shear stress
GSE23307 Cell type-specific induction of mRNA in human B cells and monocytes by IFN-beta
GSE23734 Transforming properties of 8p11-12 amplified genes in human breast cancer
GSE23779 Genome-wide expression analysis comparing SKOV3ip1 and the taxane-resistant SKOV3TRip2
GSE23991 Effect of zebularine on primary human liver cancer cell lines
GSE24097 Investigation of extra-telomeric effects of hTERT in neoplastic transformation of IMR90 cells
GSE24497 ER stress impairs the insulin signaling pathway through mitochondrial damage in SH-SY5Y human neuroblastoma cells (part 1)
GSE24499 ER stress impairs the insulin signaling pathway through mitochondrial damage in SH-SY5Y human neuroblastoma cells (part 2)
GSE24500 ER stress impairs the insulin signaling pathway through mitochondrial damage in SH-SY5Y human neuroblastoma cells
GSE24993 Expression Profiling of Tissues versus Primary Cultures from Colorectal Cancer Patients
GSE25001 Whole blood gene expression in Vietnamese dengue patients
GSE25077 Gene expression in response to progestin R5020
GSE25580 Examination of impact of pathogenic mutations in LRRK2 upon gene expression in patient fibroblasts and HEK cells
GSE26055 Claudin-7 is frequently overexpressed in ovarian cancer and promotes invasion
GSE26106 Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue
GSE26239 Improved Innate and Adaptive Immunostimulation by Genetically Modified HIV-1 Protein Expressing NYVAC Vectors
GSE26295 The effects of 3OC12-HSL on global gene expression in primary human aortic endothelial cells (HAEC).
GSE26465 Beta-microseminoprotein (MSMB) downregulation is associated with increased drug resistance in ovarian cancer
GSE26566 Molecular classification of human cholangiocarcinoma
GSE26821 Regulation of hTERT by BCR-ABL at multiple levels in K562 cells
GSE27073 Gene expression induced by TSA in undifferentiated human primary myoblasts versus terminally differentiated human myotubes
GSE27165 A profibrotic gene expression program induced by Egr-1 in skin fibroblasts
GSE27285 Transcriptome and translational signaling following endurance exercise in trained skeletal muscle: impact of dietary protein
GSE27834 miR-371-3 expression predicts neural differentiation potential in human pluripotent stem cells
GSE28433 The effects of YB1 knockdown on global gene expression in tumour cell lines.
GSE28679 Comparison of Trabecular Meshwork-Derived Cells (TMDCs) with other somatic Cell Types
GSE28893 Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue [Illumina Expression Array]
GSE28894 Gene expression changes across multiple regions of the Parkinson’s disease brain
GSE29214 Macrophages in Human Colorectal Cancer are Pro-inflammatory and Prime T Cells towards the Anti-Tumor Type-1 Inflammatory Response
GSE29238 The effects of knockdown of PML by different individual siRNAs in HUVEC cells
GSE29359 Analysis of p53 target genes in melanoma part 1
GSE29377 Analysis of p53 target genes in melanoma
GSE30205 A Parallel Study of mRNA and MicroRNA Profiling of Peripheral Blood in Young Adult Women
GSE30369 Gene expression in leucocytes of patients with autosomal dominat neronal ceroid lipofuscinosis (Kufs disease)
GSE30670 Context-Specific Regulation of NF-κB Target Gene Expression by EZH2 in Breast Cancers
GSE31149 Progesterone activates multiple innate immune pathways in Chlamydia trachomatis-infected endocervical cells
GSE31279 Decoding differentially regulated epithelial and stromal pathways in colorectal cancer
GSE32335 A Distinct Reactive Oxygen Species Profile confers Chemoresistance in Glioma-Propagating Cells and Associates with Patient Survival Outcome
GSE32453 Study of transcriptional expression in HCM
GSE34100 Expression profiling of MXD3 stable cell lines
GSE34101 Role of MXD3 in DAOY cell proliferation
GSE35000 Interaction effects of knockdown of PML and TNFalpha treatment in HUVEC cells
GSE36588 Genome-wide gene expression analysis of HCT116 cells subjected to stable gelsolin overexpression
GSE37729 Genome-wide analysis of miRNA-associated transcriptome profiles in multiple cell models
GSE38708 Human Breast Tumor Cored Sample mRNA Array
GSE38743 Acquired resistance of Jurkat cells to TNF-related apoptosis-inducing ligand (TRAIL)
GSE38745 Acquired resistance of Jurkat cells to TNF-related apoptosis-inducing ligand (TRAIL): a role for histone deacetylase inhibitors as powerful apoptosis sensitizer.
GSE39345 Microarray gene expression profiles of peripheral blood mononuclear cells in patients with advanced stage non-small cell lung cancer treated with first line combination chemotherapy
GSE39954 A human genome-wide screen for regulators of clathrin-coated vesicle formation
GSE40640 A radiation-induced gene expression signature as a tool to predict acute radiotherapy-induced adverse side effects
GSE42158 IL-21 regulates the expression of chemokine genes in B-chronic lymphocytic leukemia
GSE42193 IL-21 controls gene expression in B-chronic lymphocytic leukemia (CLL) cells through micro-RNA regulation
GSE43397 Systemic inflammation is associated with differential gene expression and airway neutrophilia in asthma
GSE45052 Non-steroidal Anti-inflammatory Drugs Decrease E2F1 Expression and Inhibit Cell Growth in Ovarian Cancer Cells
GSE45111 A sputum gene expression signature of six biomarkers identifies asthma inflammatory phenotype and steroid responsiveness
GSE45405 Examination of the MAPK pathway gene expression in patient samples
GSE46931 MDAH-041 Spontaneous Immortalization
GSE46955 Transcriptome analysis of blood monocytes from sepsis patients
GSE49839 A Parallel Study of mRNA and MicroRNA Profiling of Peripheral Blood in Young Adult Women (mRNA Profiling)
GSE50135 A novel chordoma xenograft allows in vivo drug testing and reveals the importance of NF-kB signaling in chordoma biology [expression array]
GSE50137 A novel chordoma xenograft allows in vivo drug testing and reveals the importance of NF-kB signaling in chordoma biology
GSE50954 Genes induced by IFN-beta, IFN-gamma or unphosphoraylted STAT1 in human fibroblasts
GSE51495 Peripheral blood mononuclear cell- and cortical bone-derived transcriptional profiles
GSE51874 Gene Expression in the Human Mammary Epithelium in response to consumption of high fat (H-FAT) and high carbohdyrate (H-CHO) diets.
GSE54869 Gene expression analysis in AML systems after 6 hours of HDACi treatments
GSE54871 Gene expression analysis in AML cell lines and in primary blasts of AML patients after 6 hours of HDACi treatment.
GSE55154 Gene expression analysis in AML cells lines, AML primary blasts and in CD34+ normal progenitors after 6-hour exposure to HDACi
GSE55472 RPF-1 transcription factor coordinates expression of developmental genes in inducible HEK293/RPF-1 stable transfectants
GSE57120 Gene expression profile analysis of human keratinocyte HaCaT cells treated with obacunone
GSE57121 Gene expression profiles of human keratinocytes and hepatocytes treated with obacunone
GSE61926 Microarray gene expression profiles of peripheral blood mononuclear cells in patients with advanced stage non-small cell lung cancer treated with first line combination chemotherapy with or without Rikkunshito treatment
GSE64827 Human umbilical cord matrix mesenchymal stem cells suppress the growth of breast cancer by expression of tumor suppressor genes [human]
GSE64839 Human umbilical cord matrix mesenchymal stem cells suppress the growth of breast cancer by expression of tumor suppressor genes
GSE71099 Comparative analysis of gene expression profiles in prostate cancer cells after treatment by Dexamethasone or CpdA
GSE74602 30 paired normal and tumor colorectal samples
GSE74604 Colon cancer
GSE119262 Gene expression profiling of pre-operative mTOR inhibitor everolimus treatment in breast cancer
GSE136411 Design of an unbiased machine learning workflow to predict Multiple Sclerosis staging from blood transcriptome
GSE137268 Transcriptomic analysis of induced sputum samples in severe asthma
GSE141174 Genome-wide analysis of colorectal cancer gene expression by using primary tumors, normal colon and lymph nodes
GSE147880 Comparative transcriptomic profiles in U-BIOPRED and Australian Newcastle severe asthma cohorts [sputum]
GSE147881 Comparative transcriptomic profiles in U-BIOPRED and Australian Newcastle severe asthma cohorts
GSE163154 Maastricht Human Plaque Study (MaasHPS)
GSE169732 Genome-wide analysis of SHOX targets in NHDF cells expressing SHOX WT vs SHOX HM mutant
Relations Alternative to
GPL5060 Alternative to
GPL5104 Alternative to
GPL6014 Alternative to
GPL6255
Data table header descriptions ID Unique identifier for the probe (across all products and species)
Species Source Transcript sequence source name
Search_Key Internal id useful for custom design array
Transcript Internal transcript id
ILMN_Gene Internal gene symbol
Source_Reference_ID Id in the source database
RefSeq_ID Refseq id
Entrez_Gene_ID Entrez gene id
GI Genbank id
Accession Genbank accession number
Symbol Gene symbol from the source database
Protein_Product Genbank protein accession number
Array_Address_Id Decoder id
Probe_Type Information about what this probe is targeting
Probe_Start Position of the probe relative to the 5' of the source transcript sequence
SEQUENCE Probe sequence
Chromosome Chromosome
Probe_Chr_Orientation Orientation on the NCBI genome built
Probe_Coordinates genomic position of the probe on the NCBI genome build 36 version 3
Definition Gene description from the source
Ontology_Component Cellular component annotations from Gene Ontology project
Ontology_Process Biological process annotations from Gene Ontology project
Ontology_Function Molecular function annotations from Gene Ontology project
Synonyms Gene symbol synonyms from Refseq
GB_ACC
Data table ID Species Source Search_Key Transcript ILMN_Gene Source_Reference_ID RefSeq_ID Entrez_Gene_ID GI Accession Symbol Protein_Product Array_Address_Id Probe_Type Probe_Start SEQUENCE Chromosome Probe_Chr_Orientation Probe_Coordinates Definition Ontology_Component Ontology_Process Ontology_Function Synonyms GB_ACC ILMN_1698220
Homo sapiens
RefSeq
ILMN_13666
ILMN_13666
PHTF2
NM_020432.2
NM_020432.2
57157
40254932
NM_020432.2
PHTF2
NP_065165.2
2900438
S
4677
CAAAGAGAATTGTGGCAGATGTTGTGTGTGAACTGTTGTTTCTTTGCCAC
7
+
77424374-77424423
Homo sapiens putative homeodomain transcription factor 2 (PHTF2), mRNA.
endoplasmic reticulum [goid 5783] [pmid 11256614] [evidence IDA]
DKFZP564F013; FLJ33324; MGC86999
NM_020432.2
ILMN_1810835
Homo sapiens
RefSeq
ILMN_10478
ILMN_175835
SPRR3
NM_005416.1
NM_005416.1
6707
4885606
NM_005416.1
SPRR3
NP_005407.1
2640692
S
683
GAAGCCAACCACCAGATGCTGGACACCCTCTTCCCATCTGTTTCTGTGTC
1
+
151242655-151242704
Homo sapiens small proline-rich protein 3 (SPRR3), mRNA.
cornified envelope [goid 1533] [pmid 15232223] [evidence TAS]
keratinocyte differentiation [goid 30216] [pmid 8325635] [evidence NAS]; wound healing [goid 42060] [pmid 10510474] [evidence TAS]; epidermis development [goid 8544] [pmid 8325635] [evidence NAS]; keratinization [goid 31424] [evidence IEA]
structural molecule activity [goid 5198] [pmid 15232223] [evidence TAS]; protein binding [goid 5515] [pmid 10510474] [evidence IPI]
NM_005416.1
ILMN_1782944
Homo sapiens
RefSeq
ILMN_27850
ILMN_27850
GPR37L1
NM_004767.2
NM_004767.2
9283
31377792
NM_004767.2
GPR37L1
NP_004758.2
1690440
S
2372
GATCCCTGGGTTGCCCTGTCCCAACCTCCTTGTTAGGTGCTTTCCCATAG
1
+
200365170-200365219
Homo sapiens G protein-coupled receptor 37 like 1 (GPR37L1), mRNA.
membrane [goid 16020] [evidence IEA]; integral to membrane [goid 16021] [pmid 9539149] [evidence NAS]
G-protein coupled receptor protein signaling pathway [goid 7186] [evidence IEA]; signal transduction [goid 7165] [evidence IEA]
receptor activity [goid 4872] [evidence IEA]; G-protein coupled receptor activity, unknown ligand [goid 16526] [pmid 9539149] [evidence NAS]; rhodopsin-like receptor activity [goid 1584] [evidence IEA]
ET(B)R-LP-2; ETBR-LP-2
NM_004767.2
ILMN_1692858
Homo sapiens
RefSeq
ILMN_10309
ILMN_10309
FBXO25
NM_012173.3
NM_012173.3
26260
34878756
NM_012173.3
FBXO25
NP_036305.2
1030747
A
1937
CTGGGGTTGGGGGCTGGTCTGTGCATAATCCTGGACTGTGATGGGAACAG
8
+
409448-409497
Homo sapiens F-box protein 25 (FBXO25), transcript variant 3, mRNA.
ubiquitin ligase complex [goid 151] [pmid 10531035] [evidence NAS]
protein ubiquitination [goid 16567] [pmid 10531035] [evidence NAS]
ubiquitin-protein ligase activity [goid 4842] [pmid 10531035] [evidence NAS]
MGC51975; MGC20256; FBX25
NM_012173.3
ILMN_1668162
Homo sapiens
RefSeq
ILMN_7652
ILMN_7652
DGAT2L3
NM_001013579.1
NM_001013579.1
158833
61888901
NM_001013579.1
DGAT2L3
NP_001013597.1
6480482
S
782
GTCAAGGCTCCACTGGGCTCCTGCCATACTCCAGGCCTATTGTCACTGTG
X
+
69376459-69376508
Homo sapiens diacylglycerol O-acyltransferase 2-like 3 (DGAT2L3), mRNA.
membrane [goid 16020] [evidence IEA]; integral to membrane [goid 16021] [evidence IEA]; endoplasmic reticulum [goid 5783] [evidence IEA]
lipid biosynthesis [goid 8610] [evidence IEA]; lipid metabolism [goid 6629] [evidence IEA]
acyltransferase activity [goid 8415] [evidence IEA]; transferase activity [goid 16740] [evidence IEA]
AWAT1; DGA2
NM_001013579.1
ILMN_1682799
Homo sapiens
RefSeq
ILMN_1387
ILMN_1387
STAMBPL1
NM_020799.2
NM_020799.2
57559
52694663
NM_020799.2
STAMBPL1
NP_065850.1
7160255
S
1746
TGTAAGCACCGTCAACATCAGACACCTACTCATGGACATGTGGTTGCCGG
10
+
90672973-90673022
Homo sapiens STAM binding protein-like 1 (STAMBPL1), mRNA.
ubiquitin cycle [goid 6512] [evidence IEA]
zinc ion binding [goid 8270] [evidence IEA]; metal ion binding [goid 46872] [evidence IEA]; metallopeptidase activity [goid 8237] [evidence IEA]; ubiquitin thiolesterase activity [goid 4221] [evidence IEA]
bA399O19.2; AMSH-LP; ALMalpha; KIAA1373; FLJ31524; AMSH-FP
NM_020799.2
ILMN_1696317
Homo sapiens
RefSeq
ILMN_15285
ILMN_17773
CACNA2D4
NM_001005766.1
NM_001005766.1
93589
54607061
NM_001005766.1
CACNA2D4
NP_001005766.1
1470386
A
4998
GCCCCCTTACAGCAGAAGACACTGCAGCTCGAAGACAGCTTAAGTGGCAG
12
-
1771634-1771683
Homo sapiens calcium channel, voltage-dependent, alpha 2/delta subunit 4 (CACNA2D4), transcript variant 3, mRNA.
membrane [goid 16020] [evidence IEA]
RCD4
NM_001005766.1
ILMN_1669181
Homo sapiens
RefSeq
ILMN_138201
ILMN_12798
ACOX1
NM_004035.5
NM_004035.5
51
83641871
NM_004035.5
ACOX1
NP_004026.2
3450138
I
603
GGCATGTTCCTGCCCACCTTGCTTCACCAGGCAACTGCGGAGCAGCAGGA
17
-
71467958-71468007
Homo sapiens acyl-Coenzyme A oxidase 1, palmitoyl (ACOX1), transcript variant 1, mRNA.
peroxisome [goid 5777] [pmid 7876265] [evidence NAS]
prostaglandin metabolism [goid 6693] [pmid 7876265] [evidence NAS]; fatty acid beta-oxidation [goid 6635] [evidence IEA]; lipid metabolism [goid 6629] [pmid 8159712] [evidence TAS]; electron transport [goid 6118] [evidence IEA]
acyl-CoA dehydrogenase activity [goid 3995] [evidence IEA]; oxidoreductase activity [goid 16491] [evidence IEA]; electron donor activity [goid 9053] [evidence NR ]; acyl-CoA oxidase activity [goid 3997] [pmid 7876265] [evidence NAS]; FAD binding [goid 50660] [evidence IEA]
SCOX; MGC1198; ACOX; PALMCOX
NM_004035.5
ILMN_1665311
Homo sapiens
RefSeq
ILMN_1785
ILMN_1785
STH
NM_001007532.1
NM_001007532.1
246744
56090268
NM_001007532.1
STH
NP_001007533.1
1050195
S
97
CAGCCTCTGTGTGAGTGGATGATTCAGGTTGCCAGAGACAGAACCCTCAG
17
+
41432579-41432628
Homo sapiens saitohin (STH), mRNA.
MGC163193; MGC163191
NM_001007532.1
ILMN_1734631
Homo sapiens
RefSeq
ILMN_28546
ILMN_179976
CLYBL
NM_138280.3
NM_138280.3
171425
45580744
NM_138280.3
CLYBL
NP_612124.3
5550445
I
2073
GTAACTCAGAGTCCCATTCCACAAGCCCATGCTAGTGAGCCAACACAAAC
13
+
99359185-99359234
Homo sapiens citrate lyase beta like (CLYBL), transcript variant 1, mRNA.
citrate lyase complex [goid 9346] [evidence IEA]
aromatic compound metabolism [goid 6725] [evidence IEA]
carbon-carbon lyase activity [goid 16830] [evidence IEA]; citrate (pro-3S)-lyase activity [goid 8815] [evidence IEA]
bA134O15.1; CLB
NM_138280.3
ILMN_1711453
Homo sapiens
RefSeq
ILMN_24114
ILMN_24114
CLEC12A
NM_201625.1
NM_201625.1
160364
42490743
NM_201625.1
CLEC12A
NP_963919.1
4210615
I
481
GCCCACAAGGAGGACTTACAATGTGGAACTTAGTCTCTTTCCCTCACTCC
12
+
10023039-10023088
Homo sapiens C-type lectin domain family 12, member A (CLEC12A), transcript variant 3, mRNA.
sugar binding [goid 5529] [evidence IEA]; receptor activity [goid 4872] [evidence IEA]
CLL1; MICL; CLL-1; DCAL-2; MGC70602
NM_201625.1
ILMN_1784717
Homo sapiens
RefSeq
ILMN_30266
ILMN_30266
RPS19
NM_001022.3
NM_001022.3
6223
48255921
NM_001022.3
RPS19
NP_001013.1
4250487
S
739
CTGACACCTCAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTGGC
19
+
47065619-47065663:47067259-47067263
Homo sapiens ribosomal protein S19 (RPS19), mRNA.
nucleolus [goid 5730] [pmid 16289379] [evidence IDA]; ribosome [goid 5840] [evidence IEA]; intracellular [goid 5622] [evidence IEA]; cytosolic small ribosomal subunit (sensu Eukaryota) [goid 5843] [pmid 15883184] [evidence IDA]
positive regulation of cell motility [goid 51272] [pmid 16289379] [evidence TAS]; response to extracellular stimulus [goid 9991] [pmid 16289379] [evidence TAS]; protein biosynthesis [goid 6412] [pmid 9988267] [evidence TAS]; erythrocyte differentiation [goid 30218] [pmid 16289379] [evidence IMP]
RNA binding [goid 3723] [pmid 9988267] [evidence TAS]; structural constituent of ribosome [goid 3735] [pmid 15883184] [evidence IDA]; protein binding [goid 5515] [pmid 11716516] [evidence IPI]
DBA
NM_001022.3
ILMN_1702928
Homo sapiens
RefSeq
ILMN_4617
ILMN_4500
FBXO9
NM_012347.4
NM_012347.4
26268
117190362
NM_012347.4
FBXO9
NP_036479.1
6520670
A
2992
AGGTGAAATGTGCATACAGAAGGAAGAGAGTTGGCCAGGTGTGGTGACTC
Homo sapiens F-box protein 9 (FBXO9), transcript variant 1, mRNA.
ubiquitin ligase complex [goid 151] [pmid 10531037] [evidence NAS]
protein ubiquitination [goid 16567] [pmid 10531037] [evidence NAS]
binding [goid 5488] [evidence IEA]; ubiquitin-protein ligase activity [goid 4842] [pmid 10531037] [evidence NAS]
dJ341E18.2; DKFZp434C0118; NY-REN-57; KIAA0936; FBX9; VCIA1
NM_012347.4
ILMN_1667120
Homo sapiens
RefSeq
ILMN_4500
ILMN_4500
FBXO9
NM_012347.4
NM_012347.4
26268
117190362
NM_012347.4
FBXO9
NP_036479.1
7330253
I
33
GGGCAACTGGTGTGTTTATATGCCTGACATTATTTGGGTTTTCCCCCCTC
Homo sapiens F-box protein 9 (FBXO9), transcript variant 1, mRNA.
ubiquitin ligase complex [goid 151] [pmid 10531037] [evidence NAS]
protein ubiquitination [goid 16567] [pmid 10531037] [evidence NAS]
binding [goid 5488] [evidence IEA]; ubiquitin-protein ligase activity [goid 4842] [pmid 10531037] [evidence NAS]
dJ341E18.2; DKFZp434C0118; NY-REN-57; KIAA0936; FBX9; VCIA1
NM_012347.4
ILMN_1761911
Homo sapiens
RefSeq
ILMN_18324
ILMN_18324
SCYL1BP1
NM_152281.1
NM_152281.1
92344
22748638
NM_152281.1
SCYL1BP1
NP_689494.1
3930743
S
1385
TCTAGGGGTATGTTTCACCTTGATTTTGGCCCGGTTCTTTCAGTGTTCCG
1
+
168788407-168788456
Homo sapiens SCY1-like 1 binding protein 1 (SCYL1BP1), mRNA.
cytoplasm [goid 5737] [pmid 12783284] [evidence ISS]
protein binding [goid 5515] [pmid 15781263] [evidence IPI]
NTKL-BP1; MGC51263; NTKLBP1; FLJ11752; MGC70512; RP11-545I10.1
NM_152281.1
ILMN_1706784
Homo sapiens
RefSeq
ILMN_29030
ILMN_29030
H2AFV
NM_138635.2
NM_138635.2
94239
41406072
NM_138635.2
H2AFV
NP_619541.1
2850612
I
565
GCTGAACCAAGGAACTGCCCGAATGTGCTGAACAAGGACATTTGCTTCTC
7
-
44836137-44836186
Homo sapiens H2A histone family, member V (H2AFV), transcript variant 2, mRNA.
chromosome [goid 5694] [evidence IEA]; nucleus [goid 5634] [evidence IEA]; nucleosome [goid 786] [evidence IEA]
nucleosome assembly [goid 6334] [evidence IEA]; chromosome organization and biogenesis (sensu Eukaryota) [goid 7001] [evidence IEA]
DNA binding [goid 3677] [evidence IEA]
MGC1947; H2AV; MGC10831; FLJ26479; MGC10170
NM_138635.2
ILMN_1751493
Homo sapiens
RefSeq
ILMN_20676
ILMN_169445
NPFFR2
NM_004885.1
NM_004885.1
10886
4758819
NM_004885.1
NPFFR2
NP_004876.1
3610215
I
263
GGGGGACAGACGTCGGCTGGGATTGAGCCGGCAGACTGCGAAAAGTAGCT
4
+
73116647-73116696
Homo sapiens neuropeptide FF receptor 2 (NPFFR2), transcript variant 1, mRNA.
integral to plasma membrane [goid 5887] [pmid 10079187] [evidence TAS]; membrane [goid 16020] [evidence IEA]
G-protein coupled receptor protein signaling pathway [goid 7186] [pmid 10079187] [evidence TAS]; signal transduction [goid 7165] [evidence IEA]; detection of abiotic stimulus [goid 9582] [pmid 10851242] [evidence TAS]
neuropeptide receptor activity [goid 8188] [evidence IEA]; receptor activity [goid 4872] [evidence IEA]; rhodopsin-like receptor activity [goid 1584] [evidence IEA]
NPFF2; NPGPR; GPR74
NM_004885.1
ILMN_1815346
Homo sapiens
RefSeq
ILMN_16309
ILMN_16309
TMEM136
NM_174926.1
NM_174926.1
219902
28376667
NM_174926.1
TMEM136
NP_777586.1
6180670
S
694
CCATGCTTGGAGAAGCAGGCGGAGTGAGGAACGGCAGCTGAAACACAACG
11
+
119706365-119706414
Homo sapiens transmembrane protein 136 (TMEM136), mRNA.
integral to membrane [goid 16021] [evidence IEA]
MGC17839
NM_174926.1
ILMN_1774687
Homo sapiens
RefSeq
ILMN_3497
ILMN_3497
PRKAG1
NM_002733.3
NM_002733.3
5571
47132573
NM_002733.3
PRKAG1
NP_002724.1
7150377
A
1527
CCATAATGTGAGTGGGGAGGATTGTGGGGAGGAGGGGCTTTGGGTTCCTG
12
-
47682437-47682486
Homo sapiens protein kinase, AMP-activated, gamma 1 non-catalytic subunit (PRKAG1), transcript variant 1, mRNA.
fatty acid biosynthesis [goid 6633] [evidence IEA]; protein amino acid phosphorylation [goid 6468] [pmid 2342480] [evidence TAS]; signal transduction [goid 7165] [pmid 2342480] [evidence TAS]; spermatogenesis [goid 7283] [pmid 9598317] [evidence TAS]
cAMP-dependent protein kinase activity [goid 4691] [pmid 9598317] [evidence TAS]
AMPKG; MGC8666
NM_002733.3
ILMN_1764927
Homo sapiens
RefSeq
ILMN_9221
ILMN_166833
CDC42EP1
NM_152243.1
NM_152243.1
11135
23238225
NM_152243.1
CDC42EP1
NP_689449.1
730768
A
2005
CCAACATCCCCGCCCCAGCCTCCCTCTTACCCCAGAAAGGTCAGGTATGA
22
+
36295228-36295277
Homo sapiens CDC42 effector protein (Rho GTPase binding) 1 (CDC42EP1), transcript variant 1, mRNA.
regulation of cell shape [goid 8360] [pmid 11035016] [evidence IDA]; positive regulation of pseudopodium formation [goid 31274] [pmid 11035016] [evidence IDA]
MGC15316; MSE55; CEP1; BORG5
NM_152243.1
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