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Platform GPL5821 Query DataSets for GPL5821
Status Public on Sep 25, 2007
Title NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (8 of 8)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number B3933-08-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 8 of 8 Array 8 of 8 chr18 48,217,444 76,116,688
 
Submission date Sep 07, 2007
Last update date Oct 26, 2010
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (1) GSM228524
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier. Used to identify a probe sequence within a design.
SEQ_ID The NimbleGen sequence identifier.
GENOME_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.
GB_RANGE RefSeq accession with probe start and end coordinates

Data table
ID SEQ_ID GENOME_COUNT LENGTH GC SEQUENCE GB_RANGE
CHR18P048217444 chr18 1 57 0.33 TTCTTTTAACTATGGACCACTACTGTATAGGTATTCACAATGAAGTAGGCATTACTT NC_000018.8[48217444..48217500]
CHR18P048218140 chr18 1 58 0.36 TGGCTATATGGAACAGGAACCACTGTCCACCTATATTCAAGAAGAGTTAAAATTTAGA NC_000018.8[48218140..48218197]
CHR18P048218825 chr18 1 61 0.34 TTTTCACATTAACATAGTCTACTTAGCTCATAGAGTATCTTCCCATTGGGAAATTCTGCAA NC_000018.8[48218825..48218885]
CHR18P048220902 chr18 1 58 0.4 GAGATGAGTTGAAAGGGAGTGATATTGCATAGTAAACAGTAAATGCCTCACACAATGG NC_000018.8[48220902..48220959]
CHR18P048221606 chr18 1 53 0.42 CATGATACTGAATCAGGAATGAGACTAACAGGAGGCAGGAACTCCACAAAAAT NC_000018.8[48221606..48221658]
CHR18P048222321 chr18 1 51 0.43 GAGATGTGCACCATAAACCATAGTCATCCATCATAGAGAAGTAGCTTGTGC NC_000018.8[48222321..48222371]
CHR18P048223096 chr18 1 61 0.34 GCTGCAGAACTTACTAATTACAAAGCAAATATAAAGATCCAGACATCTTTACTTCCACACA NC_000018.8[48223096..48223156]
CHR18P048223705 chr18 1 61 0.36 AAAGGTCATATTCCCAGACCTTTGAGAACACATAATCTATTGAAGAGAGACAAGCATACAA NC_000018.8[48223705..48223765]
CHR18P048224410 chr18 1 50 0.48 CCGGGATTTCTGTCTCAAGAACCTGGACTGACTGTGACCCATTTAACCAA NC_000018.8[48224410..48224459]
CHR18P048225125 chr18 1 50 0.44 ATATCATTGAAACCCTTCAGGTAGGCCATTAAACTCAGTGGCAGAGTGAC NC_000018.8[48225125..48225174]
CHR18P048225900 chr18 1 59 0.37 TGCAAATTTTAAGTGTTGTTTATCTGTTACTTCTCTGCTTGGGTCTCTGTGTGTAGTCT NC_000018.8[48225900..48225958]
CHR18P048226580 chr18 1 50 0.44 TGCCCGGCCTCCTTACCAGGTTTTTAACTTCAAAATCTACTTTGCCTGTA NC_000018.8[48226580..48226629]
CHR18P048227220 chr18 1 59 0.37 TTGTCTCCAGTTTTAAATCTTGGGTTTATATTACATTCGGCATAATGCCCAGAGAGACA NC_000018.8[48227220..48227278]
CHR18P048227905 chr18 1 50 0.48 GCTCAACTTCACCAGAATGGAGGTGTGCTAGTCTGTTCTCGAACTGCTAT NC_000018.8[48227905..48227954]
CHR18P048228700 chr18 1 52 0.42 CCAAAAAGGTCAGAGACTGCTGCTCTAGTCCAACCTTGAAGATAGAATAATG NC_000018.8[48228700..48228751]
CHR18P048230748 chr18 1 57 0.4 ATATACCAGACTTTGACCTGTAGACAAGGTAACCATCCATGTAGTTTGTTCTGGGAA NC_000018.8[48230748..48230804]
CHR18P048231470 chr18 1 57 0.4 AGGGATTAAATATCCATGACTAAGGGAATTAGTGAGCACCAGACCCAAAGTATGTCT NC_000018.8[48231470..48231526]
CHR18P048232190 chr18 1 50 0.48 TTTCTGTCTGAGTCTGATCCCTTGTTGCAGCTAGGCATTACCTCTTTGGG NC_000018.8[48232190..48232239]
CHR18P048232805 chr18 1 57 0.4 ATTTCCATTATCGTCCTTGATATTCGAGGGTTGGATGTAATTGATCCATGGCCTCTA NC_000018.8[48232805..48232861]
CHR18P048233595 chr18 1 57 0.4 AAATAACCCAGGTAGTCAAAGCACAGATCCATTAGGCTCGGTAGAACACATTCTTTA NC_000018.8[48233595..48233651]

Total number of rows: 385567

Table truncated, full table size 44654 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5821_2006-07-27_HG18_WG_CGH_8of8.ndf.gz 20.4 Mb (ftp)(http) NDF
GPL5821_2006-07-27_HG18_WG_CGH_8of8.pos.gz 2.9 Mb (ftp)(http) POS

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