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Platform GPL5820 Query DataSets for GPL5820
Status Public on Sep 25, 2007
Title NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (7 of 8)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number B3933-07-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 7 of 8 Array 7 of 8 chr14 24,717,751 106,359,463
 
Submission date Sep 07, 2007
Last update date Oct 26, 2010
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (13) GSM228522, GSM346693, GSM346696, GSM346699, GSM346701, GSM346969 
Series (4)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505
GSE13774 Nuclear scaffold and matrix attachment of HeLa chromatin
GSE13792 Nuclear scaffold and matrix attachment of Aortic Adventitial Fibroblast (AoAF) chromatin

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier. Used to identify a probe sequence within a design.
SEQ_ID The NimbleGen sequence identifier.
GENOME_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.
GB_RANGE RefSeq accession with probe start and end coordinates

Data table
ID SEQ_ID GENOME_COUNT LENGTH GC SEQUENCE GB_RANGE
CHR14P024717751 chr14 1 50 0.46 AGTGCACTAGAGATCTCAACTAAAGCTCTGGAGGACTGGCACATCTACAT NC_000014.7[24717751..24717800]
CHR14P024718401 chr14 1 60 0.38 ATACCTTCCCAATTCACTTATTAGCTGGTTGAATGCAGAGTATCCAACAGATAACTCCAA NC_000014.7[24718401..24718460]
CHR14P024719156 chr14 1 57 0.35 ATACACCTGACTTCCCTGACCACTGTTAGTAATATACAAGTATATCTTTCCAAAACA NC_000014.7[24719156..24719212]
CHR14P024719901 chr14 1 51 0.43 TTAACATAACACAGATGCCAGGGTCATCCAGTGAGAGTTAGATCTACAGAG NC_000014.7[24719901..24719951]
CHR14P024720554 chr14 1 58 0.4 TTCTACCCATGTTGAATGCCCACACAACAACTTAATATTTCCATCGAAGAGAAGACAG NC_000014.7[24720554..24720611]
CHR14P024721260 chr14 1 57 0.4 AAATGACCAGATGGCATTTAGGAACTAAGATCTATAAAGCTTCAGAACACAGGGCTG NC_000014.7[24721260..24721316]
CHR14P024721998 chr14 1 51 0.43 ATCCTGCAGGGACCATCTGAAGTGTAAGCTATACCTCAATTATTTGACCCT NC_000014.7[24721998..24722048]
CHR14P024728902 chr14 1 60 0.38 GTACTAGTCAAACACCACAGCAACATGTAAAATTCCTGGTATTGTTATCAGGAAGTGTGA NC_000014.7[24728902..24728961]
CHR14P024729612 chr14 1 50 0.48 GAGGCTCCCTTGCCTACTCATTTTTGGCTATCTGCCTACTCTCTAACAGT NC_000014.7[24729612..24729661]
CHR14P024730375 chr14 1 65 0.35 AATTAGCCTACATGGATATAATCAGATAATCACTTACTGGCTTACCATCAAGTCTGCTTCAGATA NC_000014.7[24730375..24730439]
CHR14P024731054 chr14 1 59 0.34 AGCCAAGCTATGTGTTGTATATCTTCATTACTTCCACTGTAAAAAGATTAGCTTTTCAC NC_000014.7[24731054..24731112]
CHR14P024731714 chr14 1 61 0.39 TCTAGTTAGCTAGCTAGCTTTCATCTGTCGACCCACCCATCATCTTTCTATAACGTTTATA NC_000014.7[24731714..24731774]
CHR14P024732434 chr14 1 52 0.42 AGTTAGCCTGCCATAGTTTCGTAGATGCTGGCAGGAGATATAAAACTCTTGT NC_000014.7[24732434..24732485]
CHR14P024733134 chr14 1 64 0.36 TTCCATAGTGAAGAGAGACTCTAACAACATAATCACACAAATACCAACTCATTACAATGTGGCA NC_000014.7[24733134..24733197]
CHR14P024733814 chr14 1 50 0.44 GGCCTCAAGGTTATGCAGTTCACCTACTTCTCTCTATTCCCTAGATTCTA NC_000014.7[24733814..24733863]
CHR14P024734534 chr14 1 58 0.36 TGAGCCATCACAGACAATAAAGTACCTAAAACTGACTAAACATCAACCATTATCCCTT NC_000014.7[24734534..24734591]
CHR14P024735294 chr14 1 57 0.35 AAACATTTACTGCTTACCTTTAATGGACTATTACCTGTGCTATGTCAGTTTACAGGA NC_000014.7[24735294..24735350]
CHR14P024735959 chr14 1 54 0.41 TATAAGGTTAGTGAGAATACAGCTCTAAGGACACCTCTGTTCTCCCTTTCAAAG NC_000014.7[24735959..24736012]
CHR14P024736694 chr14 1 61 0.3 GACTCATAAAATAATAGTTAATGTGATGAGCAGGTATGTATGAAATTTAGAAGGAATGCTT NC_000014.7[24736694..24736754]
CHR14P024737349 chr14 1 58 0.4 TGTCATTAGTGTGGGTCTACTCTCCTGCATGGTAGAAATACTTAAAAGGAACTTTCTC NC_000014.7[24737349..24737406]

Total number of rows: 385573

Table truncated, full table size 44844 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5820_2006-07-27_HG18_WG_CGH_7of8.ndf.gz 20.6 Mb (ftp)(http) NDF
GPL5820_2006-07-27_HG18_WG_CGH_7of8.pos.gz 2.9 Mb (ftp)(http) POS

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