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Platform GPL5818 Query DataSets for GPL5818
Status Public on Sep 25, 2007
Title NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (5 of 8)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number B3933-05-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 5 of 8 Array 5 of 8 chr8 55,645,810 146,271,383
 
Submission date Sep 07, 2007
Last update date Oct 26, 2010
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (1) GSM228519
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier. Used to identify a probe sequence within a design.
SEQ_ID The NimbleGen sequence identifier.
GENOME_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
GB_RANGE RefSeq accession with probe start and end coordinates
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.

Data table
ID SEQ_ID GENOME_COUNT LENGTH GC GB_RANGE SEQUENCE
CHR10P000086823 chr10 1 50 0.44 NC_000010.9[86823..86872] ATCTGTTAACCACTCTTCCTTGGGATGGTCCAGGGAATCATCTCTCTTAT
CHR10P000087528 chr10 1 50 0.46 NC_000010.9[87528..87577] TAATACAGCCTGTATGCCAGAAAGACTAGAAGCACCTGTGGACTCTGACA
CHR10P000091074 chr10 1 50 0.6 NC_000010.9[91074..91123] AGTCATGGCGGACGAGGAAGCAGGCACCTCTTCCATGACAGCAGGCGAGA
CHR10P000093869 chr10 1 52 0.31 NC_000010.9[93869..93920] TAAGCTTTTACCCTATGCTTCCCTTGCAAGTAAAATAAATTACAACTTACTT
CHR10P000100116 chr10 1 50 0.48 NC_000010.9[100116..100165] AGACTGTGCTGGTTCACACATGAAGTAGCCATAGAACTTGGTCTCACCCA
CHR10P000102982 chr10 1 62 0.27 NC_000010.9[102982..103043] TTGATCTATTCAATGGATTATACCAGAATCATGTTGATTTTATTACTGTTGCTTTATAGTAG
CHR10P000106412 chr10 1 55 0.24 NC_000010.9[106412..106466] ATATTATTGATGGAAACAAACCGCAGAAATAAATAGAATTAAGAATTCTGTAAAA
CHR10P000109902 chr10 1 50 0.64 NC_000010.9[109902..109951] TCCTCACTTTTGCCTCGGTGTCCCGGAGCTGCAGCAGCGTCTCCCTGTCC
CHR10P000114802 chr10 1 50 0.48 NC_000010.9[114802..114851] ATCTCGCCATAAGTCTTACTCAAGGGAGTTGACTCCATCACCCTGTTGTG
CHR10P000115527 chr10 1 50 0.46 NC_000010.9[115527..115576] AACTCTCAGTTTCCTGGAGCAGATGGGAGTATGAGGACAAAGAGGAAGAA
CHR10P000116287 chr10 1 50 0.44 NC_000010.9[116287..116336] TTTCCCAAAATGGACATGATGCATATGGCAAGTCAGGGACTTAGAACGTC
CHR10P000116902 chr10 1 50 0.56 NC_000010.9[116902..116951] ACAGAGTGTGGGAGGAGCGAAGGGCTCAGGCAGCATGTTCAGAACTCATC
CHR10P000117612 chr10 1 50 0.54 NC_000010.9[117612..117661] GGAGACAAACCTACGGCACCACCCGAGGGTCTAAATAACAACTGGCAGGT
CHR10P000119002 chr10 1 50 0.5 NC_000010.9[119002..119051] TATACTAAGGCAGGCGTCCTTTACAGCATGACCTCCAATGGTGGGTTCAG
CHR10P000119762 chr10 1 50 0.44 NC_000010.9[119762..119811] GACCTTTCATATAACGTGTGAACAAAAGAACACACCAAGCTCCTCCAGAG
CHR10P000120402 chr10 1 50 0.54 NC_000010.9[120402..120451] AAGCACACACAGGTGCATGTCAGCACGTGTGTGTTCACACACACACCTGG
CHR10P000121802 chr10 1 50 0.56 NC_000010.9[121802..121851] TCTGACCCATGGTACACGGGCAAGTCAGACTTAGAGAGGCGTCAAGAGGG
CHR10P000123253 chr10 1 50 0.58 NC_000010.9[123253..123302] AGGTTGGCTGGAGATAAGGCGCTCGGTGTCAGGAAGCTCTTGTGTGTGGG
CHR10P000124673 chr10 1 56 0.41 NC_000010.9[124673..124728] ATTGGGAAAGACCTACACTCTAAGAATCTGCCTTAGAGTGTAAGACCTACACTCTT
CHR10P000125343 chr10 1 63 0.37 NC_000010.9[125343..125405] GAATAATACATACCTGAGACATACTTGTACTATGTCCTAGGGCTCTTTACATATTCAGAGCTA

Total number of rows: 385573

Table truncated, full table size 45183 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5818_2006-07-27_HG18_WG_CGH_5of8.ndf.gz 20.6 Mb (ftp)(http) NDF
GPL5818_2006-07-27_HG18_WG_CGH_5of8.pos.gz 2.9 Mb (ftp)(http) POS

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