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Platform GPL5817 Query DataSets for GPL5817
Status Public on Sep 25, 2007
Title NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (4 of 8)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number B3933-04-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 4 of 8 Array 4 of 8 chr6 19,704,314 170,863,129
 
Submission date Sep 07, 2007
Last update date Oct 26, 2010
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (1) GSM228517
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier. Used to identify a probe sequence within a design.
SEQ_ID The NimbleGen sequence identifier.
GENOME_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.
GB_RANGE RefSeq accession with probe start and end coordinates

Data table
ID SEQ_ID GENOME_COUNT LENGTH GC SEQUENCE GB_RANGE
CHR06P019704314 chr6 1 54 0.39 AAAGTGTACTCTGGTACAAAGTGATGGTTGGTGGGAAGTTTACACTTCATAGTT NC_000006.10[19704314..19704367]
CHR06P019705099 chr6 1 63 0.38 TTCTGTTGCAACATGTGCCATAGAAGGCTTTTGAAGCTTTTACCTCATTATGACTGAAGATCT NC_000006.10[19705099..19705161]
CHR06P019706414 chr6 1 54 0.41 GTCTCAAACTTCCAGGTTCAAACCATCTTCTTACTTCAGGCTTTTGAGTAGCTA NC_000006.10[19706414..19706467]
CHR06P019707194 chr6 1 50 0.44 GAAAGGGAGGGATTCCCTCCACATGCCTGTCTTATTAGGTAAAATATTCC NC_000006.10[19707194..19707243]
CHR06P019707854 chr6 1 61 0.38 TTCACTTTATCAACCCATTAATACTATCTTTCACCACGGTGATGAGAATGACTGACACATG NC_000006.10[19707854..19707914]
CHR06P019708594 chr6 1 62 0.4 CACAAAATTAGCAAAGCTTCATGAAGCTTGGTGACTGAACTGACAAGCAAGCTAGGTCAAAA NC_000006.10[19708594..19708655]
CHR06P019709964 chr6 1 56 0.27 CCTGTAAATCTAATGGAAGTGTATTCCAATTTTTAATGATTTCTCAATTACTGTAA NC_000006.10[19709964..19710019]
CHR06P019710699 chr6 1 53 0.42 AACAAACCACTCCAAACTCAGTGACATAAAACAGCAACCATTATGCTCACAGG NC_000006.10[19710699..19710751]
CHR06P019711394 chr6 1 60 0.35 TTTACACATAATCACTGAATTACCAACAACTTTATGCTTCAGTTCTAACACGAGCCACAT NC_000006.10[19711394..19711453]
CHR06P019712004 chr6 1 50 0.46 TTGCAGTTATTCAAGCACTCAGTTGATCTGGAACCACCAAGATGACTCCC NC_000006.10[19712004..19712053]
CHR06P019712773 chr6 1 59 0.27 TTATAATATCATCCCAGTTATGTTTTACTTCTGTGTAATAAGTTGAAGCATGTTAAACA NC_000006.10[19712773..19712831]
CHR06P019713428 chr6 1 50 0.46 TAAGTTAAATGGTCTGTGCTGGGTCTAAGGGCCTAGAATCTGGCCATTTG NC_000006.10[19713428..19713477]
CHR06P019714163 chr6 1 50 0.48 AAACCAAACCATAGAAGTGCTTGAAAGGCAAGCTGGAGGTGTCAGGACCT NC_000006.10[19714163..19714212]
CHR06P019716230 chr6 1 53 0.42 CACACTGTCTTTCATCAAGCAGTTTAAGGTTGAGACATAGTGAATGGGACCAA NC_000006.10[19716230..19716282]
CHR06P019716998 chr6 1 61 0.28 TAAACATACTACTCATTAATAGAAGTTAGAGCATCAATTTGAATGTAGTTATTCTACAGTG NC_000006.10[19716998..19717058]
CHR06P019717683 chr6 1 61 0.28 TATATTGTTCTAAGGAATTGCATCATTGTCCAAATGATTTATAGTTATAGGAGCACAAAAT NC_000006.10[19717683..19717743]
CHR06P019718338 chr6 1 51 0.43 TTAATCTCACCATTAAGGCTCTGACATTGCTGAGGTCTTTACCACCAGTGA NC_000006.10[19718338..19718388]
CHR06P019719013 chr6 1 50 0.44 TGACCACAGGACATGTTGTGCCTGGCAAAATTCTCACCAATCAAAGCTTT NC_000006.10[19719013..19719062]
CHR06P019719763 chr6 1 58 0.4 GGCTGATGGCTAAACAACATTGTTTCTCATGAGCCAATTCATGTCCATGAAACCAAAA NC_000006.10[19719763..19719820]
CHR06P019720438 chr6 1 57 0.4 CACATCATTTATCACGTTACCCAGTGTCCATTCCATAAAGATCCAAATGACAGATCC NC_000006.10[19720438..19720494]

Total number of rows: 385573

Table truncated, full table size 45395 Kbytes.




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Supplementary file Size Download File type/resource
GPL5817_2006-07-27_HG18_WG_CGH_4of8.ndf.gz 20.6 Mb (ftp)(http) NDF
GPL5817_2006-07-27_HG18_WG_CGH_4of8.pos.gz 3.0 Mb (ftp)(http) POS

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