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Platform GPL5816 Query DataSets for GPL5816
Status Public on Sep 25, 2007
Title NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (3 of 8)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number B3933-03-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 3 of 8 Array 3 of 8 chr4 39,302,901 191,262,464
 
Submission date Sep 07, 2007
Last update date Oct 26, 2010
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (1) GSM228516
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier. Used to identify a probe sequence within a design.
SEQ_ID The NimbleGen sequence identifier.
GENOME_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.
GB_RANGE RefSeq accession with probe start and end coordinates

Data table
ID SEQ_ID GENOME_COUNT LENGTH GC SEQUENCE GB_RANGE
CHR04P039302901 chr4 1 50 0.5 TTCTCTGATGGGAAGTAGGCAAGAAAAGGATGCAGACTTGGCTGGGCATG NC_000004.10[39302901..39302950]
CHR04P039304362 chr4 1 53 0.42 GGCACTATTACAACTTTGGAGATACAGCAGTTCTCGCCCACTCAATTAAGAAT NC_000004.10[39304362..39304414]
CHR04P039305052 chr4 1 50 0.52 CACTGGTAGATTCAGTGTCTGCTGAGGACCCACTCTCTGGTTGGTAGATG NC_000004.10[39305052..39305101]
CHR04P039305783 chr4 1 50 0.46 CCTGTCCTTTCCTGGCCGCAGTTTACTCTTGTACAATCCTAAGAATTCTC NC_000004.10[39305783..39305832]
CHR04P039308547 chr4 1 57 0.4 TACTGGGAAAAATGCTTAGAACTACTGTGATAAAGAAAGCAATTATTGGGCCAGGCG NC_000004.10[39308547..39308603]
CHR04P039310000 chr4 1 56 0.34 AAAAGAACAGAGGTCGTAAATGTTATCAAATACATATGTAAGCCCTACTATACACC NC_000004.10[39310000..39310055]
CHR04P039311357 chr4 1 55 0.36 ACTGGCTGCTGTAATTATTCAGTTTTTAGGTTAACTATTTAAGGCCATGGTTCAC NC_000004.10[39311357..39311411]
CHR04P039312767 chr4 1 58 0.4 GAATATAAGTGTACTCTGACCCAAACACCAAAGAGAATAAGGCACTGCCCAATAAAGA NC_000004.10[39312767..39312824]
CHR04P039313497 chr4 1 50 0.5 GGAGACCAGGAGTTGCTGCAACAGATCAGGTAAGAGATGAAGATAGCCTG NC_000004.10[39313497..39313546]
CHR04P039314899 chr4 1 58 0.38 GTGGTCTCTGAAAATATGATTGTATTTTCAAACTGCGGTTGACCACAGAAACTGAAAC NC_000004.10[39314899..39314956]
CHR04P039315529 chr4 1 55 0.4 TGTTGTTCTTTCTTGCTGTTAACCACTGAAACACCTCAATTAATGAGTTCTCGGG NC_000004.10[39315529..39315583]
CHR04P039316299 chr4 1 50 0.48 TTATCACAACAAAGGACGCATCCTAGTGACTTCACCGTACCCAGAAAGGG NC_000004.10[39316299..39316348]
CHR04P039316904 chr4 1 50 0.52 TTTTGATTCGAGTGACCACGTCACTCTTAGCCACAAGACCCGGATCTGCC NC_000004.10[39316904..39316953]
CHR04P039318362 chr4 1 51 0.33 AAGGTTTCTGGTAAAACTTGAAGTGTTTCCCAGTTAACTAATTGCAAAGTA NC_000004.10[39318362..39318412]
CHR04P039319801 chr4 1 50 0.46 CAGCCATGTGAGTGAACTAACTTGATTGATCCTGCAGCCCTAATCAAGCA NC_000004.10[39319801..39319850]
CHR04P039324636 chr4 1 50 0.44 GAAGATGATTTCCCACTGAACTCCTTGCAAGCTTAGGGAAGGAAATGTTC NC_000004.10[39324636..39324685]
CHR04P039326751 chr4 1 52 0.42 AAGTCTAACATGGTTGACTCCATCTTGTTGCTATCCTTGCTGGCTATCTTTG NC_000004.10[39326751..39326802]
CHR04P039327476 chr4 1 56 0.41 TGGGATTCAGTATAAAGTCCTTGATTTTTAAAGGCCTGGATGTTCTGCCTTCCAAC NC_000004.10[39327476..39327531]
CHR04P039328106 chr4 1 61 0.39 TCATGGCTAGAGTTTTGAAATCAAGGCTGTAGAGTCTTCGTTTGCATCTGTTTGTATCCTT NC_000004.10[39328106..39328166]
CHR04P039331624 chr4 1 51 0.43 TTTTCAATGCTAACTCAGTAGTCACTGGACTGGGTCTGTAATTAAGGGTCC NC_000004.10[39331624..39331674]

Total number of rows: 385573

Table truncated, full table size 45504 Kbytes.




Download family Format
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MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5816_2006-07-27_HG18_WG_CGH_3of8.ndf.gz 20.6 Mb (ftp)(http) NDF
GPL5816_2006-07-27_HG18_WG_CGH_3of8.pos.gz 3.0 Mb (ftp)(http) POS

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