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Platform GPL5815 Query DataSets for GPL5815
Status Public on Sep 25, 2007
Title NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (2 of 8)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number B3933-02-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 2 of 8 Array 2 of 8 chr2 137,780,301 242,697,810
 
Submission date Sep 07, 2007
Last update date Oct 26, 2010
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (1) GSM228515
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier. Used to identify a probe sequence within a design.
SEQ_ID The NimbleGen sequence identifier.
GENOME_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.
GB_RANGE RefSeq accession with probe start and end coordinates

Data table
ID SEQ_ID GENOME_COUNT LENGTH GC SEQUENCE GB_RANGE
CHR02P137780301 chr2 1 51 0.43 CCACCATTGTCTTTGTGGCCAGTCATTAATGGACCAAAAAGTCATTACGTG NC_000002.10[137780301..137780351]
CHR02P137781043 chr2 1 57 0.4 CATCTTGACCTTTGTCTAATAAGCTGTTGGCTTTCCACATTTATCTAGGGATTTGGG NC_000002.10[137781043..137781099]
CHR02P137781783 chr2 1 62 0.32 TGGATTTATGTTGCACAAGCATAAATTACGTTCTTCTTAGAGTAGATTAGCATGTATTTCAG NC_000002.10[137781783..137781844]
CHR02P137782453 chr2 1 59 0.32 GCTTTATAAGTGACGGAGTACCATGATATGTAACATATCACATGTAAGAAGGTTTATTT NC_000002.10[137782453..137782511]
CHR02P137783148 chr2 1 64 0.38 AACAATAGCATAGGACAGTGCCTCATTCTTCATTCCTTTAGCTAATGCCAGATCTACTCAATAT NC_000002.10[137783148..137783211]
CHR02P137790192 chr2 1 50 0.46 TTCACAGATCTGTTAGAAGTTATGGCCTTTGCCTAAGCCTGCATGTGTGG NC_000002.10[137790192..137790241]
CHR02P137790878 chr2 1 58 0.4 GGAGGAGAGAGTGAGCCAGTAGAAGTGGGATTTATAATCATTGACTGTTGTTAACATT NC_000002.10[137790878..137790935]
CHR02P137791588 chr2 1 55 0.35 TCTCAGATAGTTTCAACATAAACCAGTTTTACTAACTCACAAAACGTGGGCTTTA NC_000002.10[137791588..137791642]
CHR02P137792298 chr2 1 51 0.43 CTCTAGCCATCTCTGTGCATAAAGAAGTACCTCCTAGTCCAGGTTTAACAA NC_000002.10[137792298..137792348]
CHR02P137792964 chr2 1 51 0.43 AGCCACAGGCACCCGCTTATCTTAAAGGAAGTTCTGAAGATTGAATTGTCT NC_000002.10[137792964..137793014]
CHR02P137793646 chr2 1 65 0.37 AGATGTTATCATGGCTGTTGCTGCCATTTTCTCATAAGCTCTACTCAACTTATCAGTTCAGATTT NC_000002.10[137793646..137793710]
CHR02P137794376 chr2 1 62 0.35 TGCATACTGTGTCATACTTATCCAGAAAAACAGTTTGCCCTGTTTCTCTAAAATGAATCATC NC_000002.10[137794376..137794437]
CHR02P137795096 chr2 1 61 0.36 AGTAGCTGTGAGATAAGTGAGATTAGTTATATAAAGTCCTCACAAAGAAGTCAGCCCATAT NC_000002.10[137795096..137795156]
CHR02P137795731 chr2 1 50 0.46 TAGGAAAGTAAGACTCTCAAGGGCCTTCAAATGAACGTTCCAGGATGGTG NC_000002.10[137795731..137795780]
CHR02P137796441 chr2 1 56 0.41 GATAACAGCCAGAACAGTTACTTTTCAGGGCCTGTTCTAAATCTTTACATGGGTTG NC_000002.10[137796441..137796496]
CHR02P137797101 chr2 1 60 0.38 CACCAGTCAACATACAGTGTAGTAGAAACTCAAGGAATGTGATAATAGAGAAGTCAAGGA NC_000002.10[137797101..137797160]
CHR02P137797901 chr2 1 65 0.37 ATAAATGCTCTGGCTCTAGCAAAGCAGAATGCCACATTATTGTCAGCAGTAATACCTTTCATTTA NC_000002.10[137797901..137797965]
CHR02P137798506 chr2 1 58 0.24 TTATAATTCTTTCATTCATTGCTTTGAATTTTACTAGGCATCTTGTGAAATAACAAAA NC_000002.10[137798506..137798563]
CHR02P137799292 chr2 1 58 0.4 GAAAGCTCTGAACTGAAGTGAAAGCAAGCAGTTAACCTCACTTTGACTTACTTTTCAG NC_000002.10[137799292..137799349]
CHR02P137799977 chr2 1 57 0.4 GAGACATATCTTCCCAGTGTCTTCTCTTAAATGTGAGGGAGCATTTTTCTTAGAAGC NC_000002.10[137799977..137800033]

Total number of rows: 385573

Table truncated, full table size 45671 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5815_2006-07-27_HG18_WG_CGH_2of8.ndf.gz 20.6 Mb (ftp)(http) NDF
GPL5815_2006-07-27_HG18_WG_CGH_2of8.pos.gz 3.0 Mb (ftp)(http) POS

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