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| Status |
Public on Jun 29, 2007 |
| Title |
Affymetrix Rhodopseudomonas palustris GeneChip 2 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Rhodopseudomonas palustris |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
A high-density oligonucleotide microarray was custom designed and manufactured by Affymetrix based on the sequences of ORFs and intergenic regions.
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| Contributor(s) |
Harwood CS, Greenberg EP, Oda Y, Schaefer AL |
| Submission date |
Jun 29, 2006 |
| Last update date |
Sep 22, 2011 |
| Contact name |
Yasuhiro Oda |
| E-mail(s) |
yasuhiro@uw.edu
|
| Organization name |
University of Washington
|
| Department |
Department of Microbiology
|
| Lab |
Harwood
|
| Street address |
Box 357242, 1705 N.E. Pacific Street, HSB K-354
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-7242 |
| Country |
USA |
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| Samples (28)
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GSM116886, GSM116900, GSM116946, GSM116950, GSM116951, GSM116952
GSM116953, GSM116954, GSM116955, GSM116956, GSM143539, GSM143540, GSM143541, GSM143542, GSM143543, GSM143544, GSM159274, GSM159275, GSM159276, GSM159277, GSM268205, GSM268206, GSM268207, GSM268208, GSM798294, GSM798299, GSM798300, GSM798301
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| Series (4)
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| GSE5194 |
Redirection of metabolism for biological hydrogen production |
| GSE6221 |
Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris |
| GSE10642 |
A New Class of Homoserine Lactone Quorum Sensing Signals |
| GSE32292 |
How post-translational modification of nitrogenase is circumvented in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively |
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| Data table header descriptions |
| ID |
|
| Descriptions |
Rhodopseudomonas palustris Affymetrix GeneChip 2 |
| ORF |
|
| SPOT_ID |
|
| Data table |
| ID |
Descriptions |
ORF |
SPOT_ID |
| RPA0001_at |
chromosomal replication initiator protein DnaA |
RPA0001 |
|
| RPA0002_at |
DNA polymerase III beta subunit |
RPA0002 |
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| RPA0003_at |
putative RecF protein |
RPA0003 |
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| RPA0004_at |
DNA gyrase subunit B |
RPA0004 |
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| RPA0005_at |
4-hydroxyphenylpyruvate dioxygenase |
RPA0005 |
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| RPA0006_at |
transcriptional regulator, AsnC family |
RPA0006 |
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| RPA0007_at |
putative signal transduction histidine kinase with PAS PAC domains |
RPA0007 |
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| RPA0008_at |
circadian clock protein |
RPA0008 |
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| RPA0009_at |
circadian clock protein |
RPA0009 |
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| RPA0010_at |
possible glutamate uptake transcriptional regulator, AsnC family |
RPA0010 |
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| RPA0011_at |
conserved hypothetical protein |
RPA0011 |
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| RPA0012_at |
possible fixS |
RPA0012 |
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| RPA0013_at |
putative cation (heavy metal) transporting ATPase |
RPA0013 |
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| RPA0014_at |
conserved hypothetical protein |
RPA0014 |
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| RPA0015_at |
4Fe-4S ferredoxin, iron-sulfur binding domain |
RPA0015 |
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| RPA0016_at |
cytochrome-c oxidase fixP chain |
RPA0016 |
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| RPA0017_at |
cytochrome oxidase subunit, small membrane protein |
RPA0017 |
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| RPA0018_at |
cytochrome-c oxidase fixO chain |
RPA0018 |
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| RPA0019_at |
cytochrome-c oxidase fixN chain, heme and copper binding subunit |
RPA0019 |
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| RPA0020_at |
Ketopantoate reductase ApbA PanE |
RPA0020 |
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Total number of rows: 4816
Table truncated, full table size 269 Kbytes.
| Supplementary data files not provided |
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