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Platform GPL3720 Query DataSets for GPL3720
Status Public on May 13, 2006
Title [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The GeneChipĀ® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays).
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=500k
http://www.affymetrix.com/analysis/index.affx
Submission date May 02, 2006
Last update date Aug 21, 2013
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (9570) GSM117201, GSM117202, GSM117203, GSM117204, GSM117206, GSM117207 
Series (150)
GSE5173 Global variation of copy number in the human genome_COMM
GSE5511 Genes regulating B cell development are mutated in acute lymphoid leukaemia
GSE7545 Affymetrix 500K Mapping Array data from breast tumors

Data table header descriptions
ID Affymetrix Probe Set ID
Affy SNP ID
dbSNP RS ID refSNP ID
Chromosome
Genome Version
DB SNP Version
Physical Position
Strand
ChrX pseudo-autosomal region
Cytoband
SEQUENCE Flanking sequence
Allele A
Allele B
Associated Gene
Genetic Map
Microsatellite
Fragment Length Start Stop
Freq Asian
Freq AfAm
Freq Cauc
Het Asian
Het AfAm
Het Cauc
af asian called
af afam called
af cauc called

Data table
ID Affy SNP ID dbSNP RS ID Chromosome Genome Version DB SNP Version Physical Position Strand ChrX pseudo-autosomal region Cytoband SEQUENCE Allele A Allele B Associated Gene Genetic Map Microsatellite Fragment Length Start Stop Freq Asian Freq AfAm Freq Cauc Het Asian Het AfAm Het Cauc af asian called af afam called af cauc called
SNP_A-1780358 10001174 rs17325399 5 NCBI Build 35, May 2004 123, October 2004 54442707 + 0 q11.2 ggataatacatattca[A/G]accaataacatacagc A G NM_152623 // downstream // 1873 // Hs.289044 // FLJ37927 // 166979 // Homo sapiens CDC20-like protein (FLJ37927), mRNA. /// NM_006144 // downstream // 898 // Hs.90708 // GZMA // 3001 // Homo sapiens granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) (GZMA), mRNA. /// NM_001008397 // upstream // 49071 // Hs.586212 // LOC493869 // 493869 // Homo sapiens similar to RIKEN cDNA 2310016C16 (LOC493869), mRNA. /// ENST00000331730 // downstream // 26453 // --- // --- // --- // --- /// ENST00000322374 // downstream // 3026 // --- // --- // --- // --- /// ENST00000296733 // downstream // 1873 // --- // --- // --- // --- /// ENST00000274306 // downstream // 898 // --- // --- // --- // Granzyme A precursor (EC 3.4.21.78) (Cytotoxic T-lymphocyte proteinase 1) (Hanukkah factor) (H factor) (HF) (Granzyme-1) (CTL tr /// ENST00000334206 // downstream // 3026 // --- // --- // --- // --- /// ENST00000296734 // upstream // 49071 // --- // --- // --- // --- 70.1601759256984 // D5S2076 // D5S645 // --- // --- /// 62.4491689961378 // D5S2076 // D5S2068 // AFM329YB9 // AFM289ZG9 /// 62.8883024925915 // --- // --- // 529024 // 226185 D5S2546 // upstream // 393390 /// D5S1741 // downstream // 149692 511 // 54442325 // 54442835 1.0 // 0.0 // Chinese /// 1.0 // 0.0 // Japanese 0.81 // 0.19 // Yoruba 1.0 // 0.0 // Caucasian 0.0 // Chinese /// 0.0 // Japanese 0.3078 // Yoruba 0.0 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780551 10003881 rs12454921 18 NCBI Build 35, May 2004 123, October 2004 52924726 - 0 q21.31 ggatatcaaagttcca[A/G]gatgtcttttgaggtt A G NM_052834 // downstream // 76707 // Hs.465213 // WDR7 // 23335 // Homo sapiens WD repeat domain 7 (WDR7), transcript variant 2, mRNA. /// NM_015879 // upstream // 244316 // Hs.565135 // ST8SIA3 // 51046 // Homo sapiens ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 (ST8SIA3), mRNA. /// NM_015285 // downstream // 76707 // Hs.465213 // WDR7 // 23335 // Homo sapiens WD repeat domain 7 (WDR7), transcript variant 1, mRNA. /// ENST00000357574 // downstream // 76707 // --- // --- // --- // WD-repeat protein 7 (TGF-beta resistance-associated protein TRAG) (Rabconnectin-3 beta). [Source:Uniprot/SWISSPROT;Acc:Q9Y4E6] /// ENST00000324000 // upstream // 244316 // --- // --- // --- // Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase (EC 2.4.99.-) (Alpha-2,8-sialyltransferase 8C) (ST8Sia III). [So /// ENST00000254442 // downstream // 76707 // --- // --- // --- // WD-repeat protein 7 (TGF-beta resistance-associated protein TRAG) (Rabconnectin-3 beta). [Source:Uniprot/SWISSPROT;Acc:Q9Y4E6] 77.6893686345296 // D18S1152 // D18S1144 // --- // --- /// 79.8578612782982 // D18S39 // D18S858 // MFD193 // ATA23G05 /// 79.9817673628658 // --- // --- // 46653 // 470145 D18S971 // upstream // 88587 /// D18S1152 // downstream // 57209 728 // 52924072 // 52924799 0.090909 // 0.909091 // Chinese /// 0.3 // 0.7 // Japanese 0.0 // 1.0 // Yoruba 0.05 // 0.95 // Caucasian 0.165289 // Chinese /// 0.42 // Japanese 0.0 // Yoruba 0.095 // Caucasian 44.0 /// 45.0 50.0 50.0
SNP_A-1780357 10001171 rs2713901 15 NCBI Build 35, May 2004 123, October 2004 54398617 - 0 q21.3 ggataatacagatgga[C/T]gatacagatttttaaa C T NM_022841 // upstream // 139815 // Hs.282855 // RFXDC2 // 64864 // Homo sapiens regulatory factor X domain containing 2 (RFXDC2), mRNA. /// NM_198524 // upstream // 46319 // Hs.511476 // TEX9 // 374618 // Homo sapiens testis expressed sequence 9 (TEX9), mRNA. /// NM_018365 // downstream // 109682 // Hs.444483 // MNS1 // 55329 // Homo sapiens meiosis-specific nuclear structural 1 (MNS1), mRNA. /// ENST00000317318 // upstream // 139815 // --- // --- // --- // --- /// ENST00000352903 // upstream // 46319 // --- // --- // --- // testis expressed sequence 9 [Source:RefSeq_peptide;Acc:NP_940926] /// ENST00000260453 // downstream // 109682 // --- // --- // --- // meiosis-specific nuclear structural protein 1 [Source:RefSeq_peptide;Acc:NP_060835] 53.761971760522 // D15S1049 // D15S648 // --- // --- /// 47.7383118746007 // D15S1016 // D15S648 // AFMB324YH9 // ATA20E12 /// 49.8467793173013 // --- // D15S998 // 522616 // --- D15S924 // upstream // 377401 /// D15S962 // downstream // 36302 646 // 54398503 // 54399148 0.090909 // 0.909091 // Chinese /// 0.102273 // 0.897727 // Japanese 0.104167 // 0.895833 // Yoruba 0.0 // 1.0 // Caucasian 0.165289 // Chinese /// 0.183626 // Japanese 0.186632 // Yoruba 0.0 // Caucasian 44.0 /// 44.0 48.0 50.0
SNP_A-1780550 10003871 rs7965238 12 NCBI Build 35, May 2004 123, October 2004 32113857 + 0 p11.21 ggatatattttcacag[C/T]agcttttagtgtagcc C T NM_001714 // upstream // 37595 // Hs.505202 // BICD1 // 636 // Homo sapiens bicaudal D homolog 1 (Drosophila) (BICD1), transcript variant 1, mRNA. /// NM_001003398 // upstream // 37595 // Hs.505202 // BICD1 // 636 // Homo sapiens bicaudal D homolog 1 (Drosophila) (BICD1), transcript variant 2, mRNA. /// NM_018169 // downstream // 76551 // Hs.445129 // FLJ10652 // 55196 // Homo sapiens hypothetical protein FLJ10652 (FLJ10652), mRNA. /// ENST00000281474 // upstream // 37595 // --- // --- // --- // Cytoskeleton-like bicaudal D protein homolog 1. [Source:Uniprot/SWISSPROT;Acc:Q96G01] /// ENST00000312561 // downstream // 76551 // --- // --- // --- // --- 55.175075448246 // ATA73C05 // D12S345 // --- // --- /// 52.9182979022303 // UNKNOWN // D12S345 // ATA73C05 // AFM296YG5 /// 51.1236167924795 // D12S1621 // D12S1692 // --- // --- D12S1308 // upstream // 50601 /// D12S1579 // downstream // 27848 747 // 32113382 // 32114128 0.966667 // 0.033333 // Chinese /// 0.988889 // 0.011111 // Japanese 0.8 // 0.2 // Yoruba 0.885417 // 0.114583 // Caucasian 0.064444 // Chinese /// 0.021975 // Japanese 0.32 // Yoruba 0.202908 // Caucasian 45.0 /// 45.0 50.0 48.0
SNP_A-1780352 10001080 rs17012816 4 NCBI Build 35, May 2004 123, October 2004 88805697 + 0 q22.1 ggataagtgaggacta[C/T]gtgcacttcagatctt C T NM_004684 // intron // 0 // Hs.62886 // SPARCL1 // 8404 // Homo sapiens SPARC-like 1 (mast9, hevin) (SPARCL1), mRNA. /// ENST00000282470 // intron // 0 // --- // --- // --- // SPARC-like protein 1 precursor (High endothelial venule protein) (Hevin) (MAST 9). [Source:Uniprot/SWISSPROT;Acc:Q14515] 95.3514747314008 // D4S1542 // D4S2929 // --- // --- /// 95.869410402114 // D4S1534 // D4S2929 // AFM155XE11 // AFMA224WC5 /// 95.8435547202882 // --- // --- // 260346 // 260791 D4S564 // upstream // 61832 /// D4S3294 // downstream // 190516 461 // 88805510 // 88805970 0.344444 // 0.655556 // Chinese /// 0.238095 // 0.761905 // Japanese 0.521739 // 0.478261 // Yoruba 0.193878 // 0.806122 // Caucasian 0.451605 // Chinese /// 0.362812 // Japanese 0.499055 // Yoruba 0.312578 // Caucasian 45.0 /// 42.0 46.0 49.0
SNP_A-1780351 10001077 rs5995963 22 NCBI Build 35, May 2004 123, October 2004 39627473 - 0 q13.2 ggataagtgaccataa[A/T]ggggcttggtggagtg A T NM_022098 // intron // 0 // Hs.558649 // LOC63929 // 63929 // Homo sapiens hypothetical protein LOC63929 (LOC63929), mRNA. /// ENST00000357137 // intron // 0 // --- // --- // --- // --- 49.219080954344 // D22S423 // D22S276 // --- // --- /// 46.637793465991 // D22S1156 // D22S1159 // AFMB001VH5 // AFMB029ZH9 /// 40.731821175824 // --- // D22S1157 // 242417 // --- D22S1541 // upstream // 271987 /// D22S1256 // downstream // 29722 349 // 39627342 // 39627690 0.931818 // 0.068182 // Chinese /// 0.897727 // 0.102273 // Japanese 0.56383 // 0.43617 // Yoruba 0.49 // 0.51 // Caucasian 0.127066 // Chinese /// 0.183626 // Japanese 0.491852 // Yoruba 0.4998 // Caucasian 44.0 /// 44.0 47.0 50.0
SNP_A-1780350 10001072 rs7785921 7 NCBI Build 35, May 2004 123, October 2004 36535963 - 0 p14.2 ggataagtctgatggc[C/T]acatgctgcaaatgga C T NM_001637 // intron // 0 // Hs.488007 // AOAH // 313 // Homo sapiens acyloxyacyl hydrolase (neutrophil) (AOAH), mRNA. /// ENST00000258749 // intron // 0 // --- // --- // --- // Acyloxyacyl hydrolase precursor (EC 3.1.1.77) [Contains: Acyloxyacyl hydrolase small subunit; Acyloxyacyl hydrolase large subuni 57.3089132783688 // D7S2250 // D7S2209 // --- // --- /// 55.5977319643468 // D7S2251 // D7S2846 // AFMA040YH1 // GATA31A10 /// 46.802163927909 // D7S656 // --- // --- // 51248 D7S704 // upstream // 97739 /// D7S781 // downstream // 112152 533 // 36535544 // 36536076 0.955556 // 0.044444 // Chinese /// 0.988889 // 0.011111 // Japanese 0.99 // 0.01 // Yoruba 0.73 // 0.27 // Caucasian 0.084938 // Chinese /// 0.021975 // Japanese 0.0198 // Yoruba 0.3942 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780748 10007663 rs2776928 10 NCBI Build 35, May 2004 123, October 2004 33614411 - 0 p11.22 ggatcctaatgatcac[A/G]aaaaaatttctcatca A G NM_001024628 // intron // 0 // Hs.131704 // NRP1 // 8829 // Homo sapiens neuropilin 1 (NRP1), transcript variant 2, mRNA. /// NM_003873 // intron // 0 // Hs.131704 // NRP1 // 8829 // Homo sapiens neuropilin 1 (NRP1), transcript variant 1, mRNA. /// NM_001024629 // intron // 0 // Hs.131704 // NRP1 // 8829 // Homo sapiens neuropilin 1 (NRP1), transcript variant 3, mRNA. /// ENST00000265371 // intron // 0 // --- // --- // --- // Neuropilin-1 precursor (Vascular endothelial cell growth factor 165 receptor) (CD304 antigen). [Source:Uniprot/SWISSPROT;Acc:O14 /// ENST00000309510 // intron // 0 // --- // --- // --- // Neuropilin-1 precursor (Vascular endothelial cell growth factor 165 receptor) (CD304 antigen). [Source:Uniprot/SWISSPROT;Acc:O14 60.4928479365128 // D10S1654 // D10S1768 // --- // --- /// 61.7584623335165 // D10S199 // D10S1208 // AFM137XH4 // ATA5A04 /// 56.4684096635241 // --- // --- // 52779 // 829553 D10S1666 // upstream // 118039 /// D10S1654 // downstream // 46758 376 // 33614246 // 33614621 0.944444 // 0.055556 // Chinese /// 0.966667 // 0.033333 // Japanese 0.69 // 0.31 // Yoruba 0.93 // 0.07 // Caucasian 0.104938 // Chinese /// 0.064444 // Japanese 0.4278 // Yoruba 0.1302 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780747 10007639 rs1108543 19 NCBI Build 35, May 2004 123, October 2004 62191356 + 0 q13.43 ggatccgtgcttgata[C/T]gtgttaatgattttga C T NM_015363 // upstream // 147469 // Hs.201776 // ZIM2 // 23619 // Homo sapiens zinc finger, imprinted 2 (ZIM2), mRNA. /// NM_006210 // upstream // 147480 // Hs.201776 // PEG3 // 5178 // Homo sapiens paternally expressed 3 (PEG3), mRNA. /// NM_020903 // upstream // 140467 // Hs.515632 // USP29 // 57663 // Homo sapiens ubiquitin specific peptidase 29 (USP29), mRNA. /// ENST00000221722 // upstream // 147469 // --- // --- // --- // Zinc finger imprinted 2. [Source:Uniprot/SWISSPROT;Acc:Q9NZV7] /// ENST00000326441 // upstream // 147480 // --- // --- // --- // Zinc finger imprinted 2. [Source:Uniprot/SWISSPROT;Acc:Q9NZV7] /// ENST00000254181 // upstream // 140467 // --- // --- // --- // Ubiquitin carboxyl-terminal hydrolase 29 (EC 3.1.2.15) (Ubiquitin thiolesterase 29) (Ubiquitin-specific processing protease 29) /// ENST00000338157 // upstream // 163528 // --- // --- // --- // Zinc finger imprinted 2. [Source:Uniprot/SWISSPROT;Acc:Q9NZV7] /// ENST00000292074 // upstream // 147477 // --- // --- // --- // Zinc finger imprinted 2. [Source:Uniprot/SWISSPROT;Acc:Q9NZV7] 109.450869085802 // D19S573 // D19S214 // --- // --- /// 99.7457760797369 // D19S891 // D19S214 // AFMA357YH1 // AFM163XF8 /// 97.2102230102757 // --- // D19S404 // 49665 // --- D19S404 // upstream // 33478 /// D19S725 // downstream // 71533 402 // 62191108 // 62191509 0.311111 // 0.688889 // Chinese /// 0.233333 // 0.766667 // Japanese 0.63 // 0.37 // Yoruba 0.23 // 0.77 // Caucasian 0.428642 // Chinese /// 0.357778 // Japanese 0.4662 // Yoruba 0.3542 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780746 10007631 rs3815760 19 NCBI Build 35, May 2004 123, October 2004 38026255 + 0 q13.11 ggatccggtgacttct[C/T]aatcattagagcataa C T NM_014270 // intron // 0 // Hs.408567 // SLC7A9 // 11136 // Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 (SLC7A9), mRNA. /// ENST00000023064 // intron // 0 // --- // --- // --- // B(0,+)-type amino acid transporter 1 (B(0,+)AT) (Glycoprotein- associated amino acid transporter b0,+AT1). [Source:Uniprot/SWISS 55.8547415683681 // D19S113 // D19S719 // --- // --- /// 56.0543230033569 // D19S414 // D19S208 // AFM295XG9 // AFM116XC7 /// 45.7814467904507 // --- // D19S868 // 57475 // --- D19S1056 // upstream // 31781 /// D19S607 // downstream // 182363 647 // 38025899 // 38026545 0.822222 // 0.177778 // Chinese /// 0.888889 // 0.111111 // Japanese 0.755102 // 0.244898 // Yoruba 0.53 // 0.47 // Caucasian 0.292346 // Chinese /// 0.197531 // Japanese 0.369846 // Yoruba 0.4982 // Caucasian 45.0 /// 45.0 49.0 50.0
SNP_A-1780745 10007594 rs11207555 1 NCBI Build 35, May 2004 123, October 2004 60153798 + 0 p31.3 ggatccctttttctcc[A/G]aaccacacatgaaaca A G NM_000775 // upstream // 49315 // Hs.152096 // CYP2J2 // 1573 // Homo sapiens cytochrome P450, family 2, subfamily J, polypeptide 2 (CYP2J2), mRNA. /// NM_152377 // downstream // 14290 // Hs.47385 // C1orf87 // 127795 // Homo sapiens chromosome 1 open reading frame 87 (C1orf87), mRNA. /// ENST00000257149 // upstream // 49315 // --- // --- // --- // Cytochrome P450 2J2 (EC 1.14.14.1) (CYPIIJ2) (Arachidonic acid epoxygenase). [Source:Uniprot/SWISSPROT;Acc:P51589] /// ENST00000294607 // downstream // 14290 // --- // --- // --- // --- 85.0492712609467 // D1S2770 // D1S2873 // --- // --- /// 89.4635224810647 // D1S2770 // D1S2873 // AFM256YH5 // AFMA054WA9 /// 78.772681176912 // --- // --- // 598847 // 322250 D1S2873 // upstream // 12029 /// D1S3556 // downstream // 100031 646 // 60153245 // 60153890 0.377778 // 0.622222 // Chinese /// 0.277778 // 0.722222 // Japanese 0.32 // 0.68 // Yoruba 0.52 // 0.48 // Caucasian 0.470123 // Chinese /// 0.401235 // Japanese 0.4352 // Yoruba 0.4992 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780743 10007516 rs926143 3 NCBI Build 35, May 2004 123, October 2004 60284581 - 0 p14.2 ggatcccttccggcta[C/G]agtttaatatcctttt C G NM_002012 // intron // 0 // Hs.196981 // FHIT // 2272 // Homo sapiens fragile histidine triad gene (FHIT), mRNA. /// ENST00000341848 // intron // 0 // --- // --- // --- // Bis(5'-adenosyl)-triphosphatase (EC 3.6.1.29) (Diadenosine 5',5'''- P1,P3-triphosphate hydrolase) (Dinucleosidetriphosphatase) ( 81.7272294029239 // D3S1234 // D3S1300 // --- // --- /// 79.4837832292042 // D3S1234 // D3S1300 // MFD76 // AFM220YH4 /// 72.4832657472101 // --- // --- // 945055 // 61867 D3S3367 // upstream // 12747 /// D3S2977 // downstream // 49819 392 // 60284354 // 60284745 0.733333 // 0.266667 // Chinese /// 0.777778 // 0.222222 // Japanese 0.276596 // 0.723404 // Yoruba 0.4 // 0.6 // Caucasian 0.391111 // Chinese /// 0.345679 // Japanese 0.400181 // Yoruba 0.48 // Caucasian 45.0 /// 45.0 47.0 50.0
SNP_A-1780549 10003852 rs1423107 5 NCBI Build 35, May 2004 123, October 2004 75468493 + 0 q13.3 ggatatattgtgaaga[C/T]cttaatgccaagatag C T NM_152408 // upstream // 419431 // Hs.432726 // FLJ35779 // 134359 // Homo sapiens hypothetical protein FLJ35779 (FLJ35779), mRNA. /// ENST00000282199 // upstream // 419431 // --- // --- // --- // --- /// ENST00000338626 // downstream // 33181 // --- // --- // --- // --- 89.7091712989519 // D5S2003 // D5S424 // --- // --- /// 78.7390220305634 // D5S1404 // D5S1977 // UT7783 // AFMA204ZF1 /// 79.8137043081195 // --- // --- // 49883 // 47629 D5S2432 // upstream // 570946 /// D5S1404 // downstream // 152480 751 // 75468239 // 75468989 0.875 // 0.125 // Chinese /// 0.966667 // 0.033333 // Japanese 1.0 // 0.0 // Yoruba 1.0 // 0.0 // Caucasian 0.21875 // Chinese /// 0.064444 // Japanese 0.0 // Yoruba 0.0 // Caucasian 44.0 /// 45.0 50.0 50.0
SNP_A-1780547 10003831 rs3771596 2 NCBI Build 35, May 2004 123, October 2004 159219047 + 0 q24.1 ggatatattagacctg[A/C]aataaatggttgttcg A C NM_003628 // intron // 0 // Hs.407580 // PKP4 // 8502 // Homo sapiens plakophilin 4 (PKP4), transcript variant 1, mRNA. /// NM_001005476 // intron // 0 // Hs.407580 // PKP4 // 8502 // Homo sapiens plakophilin 4 (PKP4), transcript variant 2, mRNA. /// ENST00000354977 // intron // 0 // --- // --- // --- // Plakophilin-4 (p0071). [Source:Uniprot/SWISSPROT;Acc:Q99569] /// ENST00000337068 // intron // 0 // --- // --- // --- // Plakophilin-4 (p0071). [Source:Uniprot/SWISSPROT;Acc:Q99569] /// ENST00000272704 // intron // 0 // --- // --- // --- // Plakophilin-4 (p0071). [Source:Uniprot/SWISSPROT;Acc:Q99569] /// ENST00000336933 // intron // 0 // --- // --- // --- // Plakophilin-4 (p0071). [Source:Uniprot/SWISSPROT;Acc:Q99569] /// ENST00000342892 // intron // 0 // --- // --- // --- // Plakophilin-4 (p0071). [Source:Uniprot/SWISSPROT;Acc:Q99569] /// ENST00000318152 // intron // 0 // --- // --- // --- // Plakophilin-4 (p0071). [Source:Uniprot/SWISSPROT;Acc:Q99569] 167.167042522087 // D2S142 // D2S306 // --- // --- /// 162.47196925451 // D2S284 // D2S354 // AFM192YD2 // AFM296XA5 /// 157.894283401867 // --- // --- // 536454 // 65548 D2S1991 // upstream // 74694 /// D2S1410 // downstream // 14732 483 // 159219027 // 159219509 0.188889 // 0.811111 // Chinese /// 0.222222 // 0.777778 // Japanese 0.1 // 0.9 // Yoruba 0.26 // 0.74 // Caucasian 0.30642 // Chinese /// 0.345679 // Japanese 0.18 // Yoruba 0.3848 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780541 10003696 rs4503732 15 NCBI Build 35, May 2004 123, October 2004 44429555 - 0 q21.1 ggatatagctcaatga[G/T]tatgcagccttaaata G T NM_021199 // downstream // 658785 // Hs.511251 // SQRDL // 58472 // Homo sapiens sulfide quinone reductase-like (yeast) (SQRDL), mRNA. /// NM_153616 // upstream // 1368423 // Hs.511265 // SEMA6D // 80031 // Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), transcript variant 2, mRN /// NM_024966 // upstream // 1368423 // Hs.511265 // SEMA6D // 80031 // Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), transcript variant 6, mRN /// NM_020858 // upstream // 1368423 // Hs.511265 // SEMA6D // 80031 // Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), transcript variant 1, mRN /// NM_153617 // upstream // 1368423 // Hs.511265 // SEMA6D // 80031 // Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), transcript variant 3, mRN /// NM_153619 // upstream // 1368423 // Hs.511265 // SEMA6D // 80031 // Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), transcript variant 5, mRN /// NM_153618 // upstream // 1368423 // Hs.511265 // SEMA6D // 80031 // Homo sapiens sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D (SEMA6D), transcript variant 4, mRN /// ENST00000260324 // downstream // 658785 // --- // --- // --- // Sulfide:quinone oxidoreductase, mitochondrial precursor (EC 1.-.-.-). [Source:Uniprot/SWISSPROT;Acc:Q9Y6N5] /// ENST00000358066 // upstream // 1368423 // --- // --- // --- // Semaphorin-6D precursor. [Source:Uniprot/SWISSPROT;Acc:Q8NFY4] /// ENST00000354744 // upstream // 1368423 // --- // --- // --- // Semaphorin-6D precursor. [Source:Uniprot/SWISSPROT;Acc:Q8NFY4] /// ENST00000355997 // upstream // 1368423 // --- // --- // --- // Semaphorin-6D precursor. [Source:Uniprot/SWISSPROT;Acc:Q8NFY4] /// ENST00000316364 // upstream // 1368423 // --- // --- // --- // Semaphorin-6D precursor. [Source:Uniprot/SWISSPROT;Acc:Q8NFY4] 44.8866820461145 // D15S659 // D15S1006 // --- // --- /// 43.7971925005584 // D15S659 // D15S1006 // GATA63A03 // AFMB291YF1 /// 42.9025193575905 // --- // --- // 585384 // 955261 D15S933 // upstream // 498270 /// D15S830 // downstream // 37432 870 // 44429243 // 44430112 0.322222 // 0.677778 // Chinese /// 0.344444 // 0.655556 // Japanese 0.3 // 0.7 // Yoruba 0.03 // 0.97 // Caucasian 0.43679 // Chinese /// 0.451605 // Japanese 0.42 // Yoruba 0.0582 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780346 10001033 rs10203791 2 NCBI Build 35, May 2004 123, October 2004 6573293 - 0 p25.2 ggataaggttggtatc[A/G]ctattcaggcaggaat A G ENST00000256722 // downstream // 365758 // --- // --- // --- // --- /// ENST00000360879 // downstream // 508319 // --- // --- // --- // --- 14.8269027090263 // D2S323 // D2S330 // --- // --- /// 13.86766914962 // D2S205 // D2S330 // AFM240YC3 // AFM269XD9 /// 13.1018022918146 // --- // D2S281 // 514233 // --- D2S281 // upstream // 35505 /// D2S1377 // downstream // 135380 861 // 6572601 // 6573461 1.0 // 0.0 // Chinese /// 1.0 // 0.0 // Japanese 0.927083 // 0.072917 // Yoruba 1.0 // 0.0 // Caucasian 0.0 // Chinese /// 0.0 // Japanese 0.1352 // Yoruba 0.0 // Caucasian 45.0 /// 45.0 48.0 50.0
SNP_A-1780345 10001027 rs7921545 10 NCBI Build 35, May 2004 123, October 2004 14183642 - 0 p13 ggataaggtatgacat[A/C]agtagaacgtgtcatc A C AB037715 // intron // 0 // Hs.330463 // FRMD4A // 55691 // Homo sapiens mRNA for KIAA1294 protein, partial cds. /// NM_018027 // intron // 0 // Hs.330463 // FRMD4A // 55691 // Homo sapiens FERM domain containing 4A (FRMD4A), mRNA. /// ENST00000358621 // intron // 0 // --- // --- // --- // FERM domain-containing protein 4A. [Source:Uniprot/SWISSPROT;Acc:Q9P2Q2] /// ENST00000357447 // intron // 0 // --- // --- // --- // FERM domain-containing protein 4A. [Source:Uniprot/SWISSPROT;Acc:Q9P2Q2] 35.1199541305775 // D10S1707 // D10S1664 // --- // --- /// 35.758909393639 // D10S527 // D10S1664 // UT1729 // AFMA210WE5 /// 35.2394684084589 // --- // D10S1664 // 599491 // --- D10S1664 // upstream // 160226 /// D10S1707 // downstream // 311984 734 // 14183563 // 14184296 0.255556 // 0.744444 // Chinese /// 0.277778 // 0.722222 // Japanese 0.78125 // 0.21875 // Yoruba 0.38 // 0.62 // Caucasian 0.380494 // Chinese /// 0.401235 // Japanese 0.341797 // Yoruba 0.4712 // Caucasian 45.0 /// 45.0 48.0 50.0
SNP_A-1780342 10001011 rs2660228 16 NCBI Build 35, May 2004 123, October 2004 4868340 + 0 p13.3 ggataaggggagagcc[A/G]ctcgtatggaagccag A G AF108461 // intron // 0 // Hs.440219 // UBN1 // 29855 // Homo sapiens ubinuclein (UBN1) mRNA, alternatively spliced, complete cds. /// NM_016936 // intron // 0 // Hs.440219 // UBN1 // 29855 // Homo sapiens ubinuclein 1 (UBN1), mRNA. /// ENST00000262376 // intron // 0 // --- // --- // --- // Ubinuclein (Ubiquitously expressed nuclear protein) (VT4). [Source:Uniprot/SWISSPROT;Acc:Q9NPG3] /// ENST00000338404 // intron // 0 // --- // --- // --- // Ubinuclein (Ubiquitously expressed nuclear protein) (VT4). [Source:Uniprot/SWISSPROT;Acc:Q9NPG3] 11.9488321676316 // D16S3072 // D16S423 // --- // --- /// 9.25572425754321 // D16S3065 // D16S423 // AFMA323YF5 // AFM249YC5 /// 12.8072219945032 // --- // --- // 505838 // 484657 D16S2903 // upstream // 2531 /// D16S2965 // downstream // 5409 623 // 4867839 // 4868461 0.988889 // 0.011111 // Chinese /// 1.0 // 0.0 // Japanese 0.377551 // 0.622449 // Yoruba 0.908163 // 0.091837 // Caucasian 0.021975 // Chinese /// 0.0 // Japanese 0.470012 // Yoruba 0.166805 // Caucasian 45.0 /// 45.0 49.0 49.0
SNP_A-1780341 10000992 rs16981668 20 NCBI Build 35, May 2004 123, October 2004 20124387 + 0 p11.23 ggataaggcccaatta[C/T]gcagttttatagcagg C T NM_015585 // intron // 0 // Hs.176013 // C20orf26 // 26074 // Homo sapiens chromosome 20 open reading frame 26 (C20orf26), mRNA. /// ENST00000245957 // intron // 0 // --- // --- // --- // --- /// ENST00000343997 // intron // 0 // --- // --- // --- // --- /// ENST00000339482 // intron // 0 // --- // --- // --- // --- /// ENST00000344011 // intron // 0 // --- // --- // --- // --- 49.3476870142322 // D20S432 // D20S912 // --- // --- /// 44.2347392961788 // D20S860 // D20S54 // AFMA337ZH9 // D20S54 /// 46.9547154655615 // D20S471 // --- // --- // 48858 D20S1101 // upstream // 174057 /// D20S578E // downstream // 160705 861 // 20124101 // 20124961 0.544444 // 0.455556 // Chinese /// 0.5 // 0.5 // Japanese 0.94 // 0.06 // Yoruba 0.96 // 0.04 // Caucasian 0.496049 // Chinese /// 0.5 // Japanese 0.1128 // Yoruba 0.0768 // Caucasian 45.0 /// 45.0 50.0 50.0
SNP_A-1780340 10000983 rs11168370 12 NCBI Build 35, May 2004 123, October 2004 46721547 + 0 q13.11 ggataaggcaatctcc[A/C]gaagtaaggaattgat A C NM_014554 // downstream // 1728 // Hs.371957 // SENP1 // 29843 // Homo sapiens SUMO1/sentrin specific peptidase 1 (SENP1), mRNA. /// M26066 // upstream // 64426 // Hs.75160 // PFKM // 5213 // Human muscle phosphofructokinase (PFKM) mRNA, complete cds. /// NM_000289 // upstream // 64609 // Hs.75160 // PFKM // 5213 // Homo sapiens phosphofructokinase, muscle (PFKM), mRNA. /// NM_001844 // upstream // 37019 // Hs.408182 // COL2A1 // 1280 // Homo sapiens collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital) (COL2A1), transcript /// NM_033150 // upstream // 37019 // Hs.408182 // COL2A1 // 1280 // Homo sapiens collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital) (COL2A1), transcript /// ENST00000004980 // downstream // 1728 // --- // --- // --- // Sentrin-specific protease 1 (EC 3.4.22.-) (Sentrin/SUMO-specific protease SENP1). [Source:Uniprot/SWISSPROT;Acc:Q9P0U3] /// ENST00000359794 // upstream // 64426 // --- // --- // --- // 6-phosphofructokinase, muscle type (EC 2.7.1.11) (Phosphofructokinase 1) (Phosphohexokinase) (Phosphofructo-1-kinase isozyme A) /// ENST00000354516 // upstream // 37019 // --- // --- // --- // Collagen alpha-1(II) chain precursor [Contains: Chondrocalcin]. [Source:Uniprot/SWISSPROT;Acc:P02458] /// ENST00000339976 // downstream // 1401 // --- // --- // --- // Sentrin-specific protease 1 (EC 3.4.22.-) (Sentrin/SUMO-specific protease SENP1). [Source:Uniprot/SWISSPROT;Acc:Q9P0U3] /// ENST00000282439 // upstream // 77881 // --- // --- // --- // 6-phosphofructokinase, muscle type (EC 2.7.1.11) (Phosphofructokinase 1) (Phosphohexokinase) (Phosphofructo-1-kinase isozyme A) /// ENST00000334441 // upstream // 43559 // --- // --- // --- // --- /// ENST00000340802 // upstream // 64609 // --- // --- // --- // 6-phosphofructokinase, muscle type (EC 2.7.1.11) (Phosphofructokinase 1) (Phosphohexokinase) (Phosphofructo-1-kinase isozyme A) /// ENST00000337299 // upstream // 37019 // --- // --- // --- // Collagen alpha-1(II) chain precursor [Contains: Chondrocalcin]. [Source:Uniprot/SWISSPROT;Acc:P02458] /// ENST00000360091 // upstream // 37176 // --- // --- // --- // Collagen alpha-1(II) chain precursor [Contains: Chondrocalcin]. [Source:Uniprot/SWISSPROT;Acc:P02458] 62.4953057794749 // D12S1701 // D12S2199 // --- // --- /// 63.5526859324791 // D12S1701 // D12S1661 // AFM345XF1 // AFMB314YH5 /// 59.9763293669542 // D12S1701 // --- // --- // 63309 D12S1814 // upstream // 46224 /// D12S2021 // downstream // 68531 848 // 46721232 // 46722079 0.693182 // 0.306818 // Chinese /// 0.8 // 0.2 // Japanese 0.84 // 0.16 // Yoruba 0.86 // 0.14 // Caucasian 0.425362 // Chinese /// 0.32 // Japanese 0.2688 // Yoruba 0.2408 // Caucasian 44.0 /// 45.0 50.0 50.0

Total number of rows: 238378

Table truncated, full table size 301208 Kbytes.




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